Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1267 |
Symbol | |
ID | 4599263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | + |
Start bp | 1341192 |
End bp | 1343129 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 639775861 |
Product | alpha amylase, catalytic region |
Protein accession | YP_922468 |
Protein GI | 119715503 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGGGGGA TGAGCGCTCC CGCCGACGTC CAGGCCGCAG CCGCCGCCCT CCTGGGCGGG CTGGGCGCCG AGCGCCGCGA GTCCTTCGCG CTGCGACTGG ACCGCTGGTG GCCGGACCTG CGCGCCGCCG TCGTCGAGCT GTACGACGAC CCCGATGCGG TGGCCCGTCG TCTCGTAGCG GTCGCCGCCG CGGGCCACGC GGCCCGCTCG GAGGACCTGC ACCGGCTCGA CGAGCGCCGG CTGCTGGAGC CGGACTGGCT GCAGCACCCG CGGATGTTCG GCTACGCCTG CTACACCGAG CGCTTCGGGG GTGACCTGGC CGGGCTGCGC GACCGGCTCG ACCACCTCGA GGACCTCGGC GTCACCTACC TGCACCTGAT GCCGCTGCTG CAGCCCCGGG AGGGCGACAA CGACGGCGGC TACGCCGTCG CCGACTACCG CACGGTCCGC CCGGACCTCG GCACCACCGC CGACCTCGCC GACCTCGCGG GGGTCCTCCG CGCCCGCGGG ATCAGCCTCG TGGTCGACCT GGTGCTCAAC CACGTCGCGC GCGAGCACGA ATGGGCGGAG CGCGCTCGGG CCGGGGAGCC GGCGTACCTC GCGTACTTCC ACCACTACCC CGACCGCGAG CTGCCCGACG CCTACGAGGC GACCCTGCCC GAGGTGTTCC CGGACTTCGC GCCCGGCAAC TTCAGCTGGG ACGACGACCT GGGCGCCTGG GTGTGGACGA CGTTCAACGC GTGGCAGTGG GACCTCGACT GGGCCAACCC CGCGGTGCTC GAGGAGTTCG CCGACATCGT CGTGACGCTC GCCAACCTGG GCGTCGAGGT GCTCCGCCTC GATGCCATCG CGTTCCTGTG GAAGCGGCTC GGCAGCACCT GCCAGAACGA GCCGGAGGTG CACGCGATCA CCCAGGCGCT GCGCGCCGTC GCGCGGCTCG CGGCGCCGGC GGTGGCGTTC AAGGCCGAGG CGATCGTCGG CCCCCGCGAC CTCGTGCAGT ACCTCGGCCT CGGCGCGCAC GCCGGGCGGG TCAGCGACCT GGCCTACCAC AACAGCCTGA TGGTGCAGGT CTGGTCGATG CTCGCCACGC AGAGCACGAC GCTGGCCCGG CACGCGCTGG CCGCGCTGCC GTCGGCGCCC GCCACCTCGA CCTGGATCAC CTATGCCCGT TGCCACGACG ACATCGGCTG GGCCATCGAC GACGGCGACG CGGCGGCCGT CGGCCTCGAC GGCCCGGCGC ACCGGCGCTT CCTCGCCGAC TGGTACGCCG GTGACTTCCC GGGCTCCTGG GCCGACGGGC TGGTCTTCCA GCACAACCCG GAGACCGGCG ACAAGCGGAT CAGCGGTACG GCGGCCTCGC TGGCCGGGCT GTCCGAGGAC ACCGACGCCG GGCTCGCGCG GATCTTCCTC GCCCACGCGA TCGTCGCCGG CTGGGGCGGG ATCCCCGTGG TGTGGAGCGG CGACGAGCTC GGCCAGCCCA ACGACCCGGA CTGGGCGACC GAGCCCGGCC ACGAGGACGA CAACCGATGG GCGCACCGGC CCCGGCTGGA CGGCCGGCTC GCCGCACAGC GCCACGACCT GCGCACGGTC CCGGGCCGGG TCTTCAGCGG GCTCGCCCAC CTGTCCCGGG TCCGGGCCGG CCTGCCGCAG CTGCACGCCT CCGCGGCCAG CGAGGTCCTC CTCGACACCG ACGAGGGCGT GCTCGCGTGC GCGCGGCGGC ACCCGAGCGG CGCGATGGTG ACCCTCTACA ACGTCACGAC CACGCCGCGG CCGTTCCCGA TCCACCGGCT GGCGGAGTGC GGCATCGGTG CGCCGTACGA CGCGCTCGGC GGGCACCCGA TCACCGCGGG CGCGGACGGC CAGGCCTGGC TGCCGCCGTA CGCCGCCTGG TGGGTGGTCG ACAGCACAGG TCCCCAGACA CGTCCCCGGA AGCATTAG
|
Protein sequence | MRGMSAPADV QAAAAALLGG LGAERRESFA LRLDRWWPDL RAAVVELYDD PDAVARRLVA VAAAGHAARS EDLHRLDERR LLEPDWLQHP RMFGYACYTE RFGGDLAGLR DRLDHLEDLG VTYLHLMPLL QPREGDNDGG YAVADYRTVR PDLGTTADLA DLAGVLRARG ISLVVDLVLN HVAREHEWAE RARAGEPAYL AYFHHYPDRE LPDAYEATLP EVFPDFAPGN FSWDDDLGAW VWTTFNAWQW DLDWANPAVL EEFADIVVTL ANLGVEVLRL DAIAFLWKRL GSTCQNEPEV HAITQALRAV ARLAAPAVAF KAEAIVGPRD LVQYLGLGAH AGRVSDLAYH NSLMVQVWSM LATQSTTLAR HALAALPSAP ATSTWITYAR CHDDIGWAID DGDAAAVGLD GPAHRRFLAD WYAGDFPGSW ADGLVFQHNP ETGDKRISGT AASLAGLSED TDAGLARIFL AHAIVAGWGG IPVVWSGDEL GQPNDPDWAT EPGHEDDNRW AHRPRLDGRL AAQRHDLRTV PGRVFSGLAH LSRVRAGLPQ LHASAASEVL LDTDEGVLAC ARRHPSGAMV TLYNVTTTPR PFPIHRLAEC GIGAPYDALG GHPITAGADG QAWLPPYAAW WVVDSTGPQT RPRKH
|
| |