Gene Noca_1260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_1260 
Symbol 
ID4599256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand+ 
Start bp1334655 
End bp1335149 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content73% 
IMG OID639775854 
ProductAllergen V5/Tpx-1 family protein 
Protein accessionYP_922461 
Protein GI119715496 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.560977 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGACC GACGCCGACC GGTCCGCACC GCGCTGGTGG CCTGCGCCGC GAGCGTGGCG 
ATGGCCGCCG GCACCGTCGT CGCGACGGTG ACCGTCGCGC CGCCCGCGCA GGCGCGGGTG 
GCCGCGGTGG AGTACCAGGC CGAGGCGTTC ACGGTGACCA ACGTCCAGCG GTTGGCGCAC 
GCGCGGGTGC CGCTACGGCA CCAGGCCTGC GTGCAGAAGT GGGCGGTGCG CCAGGCGCGC 
AAGATGGCCC GCCAGGAGCG GATGTTCCAC CAGGACCTCG CGCGGGTGGC CAACGACTGC 
GGGCTCTCGC TCGCCGGGGA GAACGTCGCG TACGGCTACC CCTCCGGGCG GTCGGTGGTC 
GTCGACGGCT GGATGAAGTC CAAGGGCCAT CGCGCGAACA TCTTGAAGCG GGACTATCGG 
CTGATGGGCA TCGGCGCGCG CCGCGCCGGT GGCACCTGGT ACGTCGCGCA GGTGTTCGGC 
CGCAAGGCCC GCTGA
 
Protein sequence
MTDRRRPVRT ALVACAASVA MAAGTVVATV TVAPPAQARV AAVEYQAEAF TVTNVQRLAH 
ARVPLRHQAC VQKWAVRQAR KMARQERMFH QDLARVANDC GLSLAGENVA YGYPSGRSVV 
VDGWMKSKGH RANILKRDYR LMGIGARRAG GTWYVAQVFG RKAR