| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1254 |
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| Symbol | |
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| ID | 4599250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1329881 |
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| End bp | 1330819 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 639775848 |
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| Product | type II secretion system protein |
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| Protein accession | YP_922455 |
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| Protein GI | 119715490 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.23353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCCG CGGTGTGGGG TGCGCTGCTG GGCGCCGTGG CGGGCTCGGG GCTGCTGCTC
GTGGCGGCAC GGGTGCGGGT GATCCGCCGG CCCCAGCTCG CCGTGCGGGT GCTGCCCTAC
GTCCGCGACC TCCCCCTGGT CGGCCGGGCG CCGCAGCTGA GGGTCGCGTC CTCGTCCACC
TCCGCGGCTG CCGGCGTGTT CGGGCCGGTG CTGCGCTCGG CCGCCGACGC CGTCGAGCGG
ATCCTCGGCG GCGCGACGTC CGTACGTCGT CGCCTCCAGC GCGCCGGCCT CGACAAGACC
GTGCACGAGT TCCGCATCGA GCAGGTGCTC TGGGGGGTGG TGGGCTTCGC CGTCGCCGCT
GCCTGGGGTG TGCTGCGGAT GCTCACCCAG CCCGGCGCCG CGGTGTCCTC CCTGCTGGCC
TGCGCGGTGG CGTTCATCGT CGGCGTCCTG GCCCGCGACA CCTACCTGAC CAGCCAGGTG
CGCGCCCGCG AGCGCCGGAT CCTGGCGGAG TTCCCGACCG TGGCCGAGCT GCTCGCGCTC
GCGGTCGCCG CCGGCGAGGG GCCGGTCGCC GCGCTGGACC GCGTCGTACG CCGCAGCGGT
GGCGAGCTGT CCGCCGACCT GGCCCGGGTG TTGGCCGAGA TCCGCACCGG CGAGCCCGTG
GCTACGGCCT TCGACGCGAT GGCGTCGGCA AGCGGGCTGC CGCTGGTCGC CCGCTTCGCC
CAGGGCATCG CGGTCGCGGT GGAGCGCGGC ACGCCCCTCG CCGACGTGTT GCACGCCCAG
GCCGCCGACG TCCGCGAGGC GGGCCGGCGC GAGCTGATCG AGGCCGCCGC CCGCAAGGAG
GTCTTCATGA TGGTGCCGGT CGTGTTCCTG GTCCTGCCCA TCACCGTGCT CTTCGCATTC
TGGCCCGGCG TCGTCGGGCT GCACCTGACC ACTCCCTGA
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| Protein sequence | MTPAVWGALL GAVAGSGLLL VAARVRVIRR PQLAVRVLPY VRDLPLVGRA PQLRVASSST
SAAAGVFGPV LRSAADAVER ILGGATSVRR RLQRAGLDKT VHEFRIEQVL WGVVGFAVAA
AWGVLRMLTQ PGAAVSSLLA CAVAFIVGVL ARDTYLTSQV RARERRILAE FPTVAELLAL
AVAAGEGPVA ALDRVVRRSG GELSADLARV LAEIRTGEPV ATAFDAMASA SGLPLVARFA
QGIAVAVERG TPLADVLHAQ AADVREAGRR ELIEAAARKE VFMMVPVVFL VLPITVLFAF
WPGVVGLHLT TP
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