| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1252 |
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| Symbol | |
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| ID | 4599248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1327723 |
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| End bp | 1329030 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639775846 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_922453 |
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| Protein GI | 119715488 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.877808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACTGA CCCACCCACC GGCGCACCCG GCGACGCACC CGGCGACGCA CCCGGCGGCC
CGACGTACGG CGAGCGCGCA CGAGGAGCTG GTCGAGCAGC TCGACCTGCA CGTCCGGGAG
CTGGTGCGGC GCGAGGCCGT GGACCCGCAG CGCGAGGCCG ACCTGGTCCG ACGGATCGCC
GAGTCGGTGG TGCGCGAGCA CGACGAGCGC AGCCTCACCG GCGCGGTCGC GCCGGTGTCC
GACGTCGACT CGATGGTCGG CGAGCTGGTC GCCCGGGTCT CCGGCTTCGG GCCGCTCCAG
CCGCTCCTCG ACGACCCCAC GGTCGAGGAG GTCTGGATCA ACGACCCGAG CCGGGTCTTC
GTGGCCCGCA ACGGCCGTCA CGAGCTGACC ACGTTGGTGC TCACCTCCGC GCAGGTGCAG
GAGCTCGTGG AGCGAATGCT GAAGACCAGC GGCCGACGCA TCGACATCAG CCAGCCGTTC
GTGGACGCGA TGCTGCCGGA GGGGCACCGC CTGCACGTGG TGCTGGAGGG GATCAGCCGA
GGCTTCTCCG CCGTCAACAT CCGCAAGTTC GTGCTGCGCG CCGCCCGGTT GCGCGACCTG
GTCGAGCTCG GCAGCCTGAC GCCCGCCGGC GCCGGCTTCC TCGAGTCCTC GGTCCGCGCC
GGGCTGAACG TGCTGGTCGC CGGCGGCACC CAGGCCGGCA AGACCACGAT GCTCAACTGC
CTGGCGGCCG CGATCCCCGG CGGCGACCGG GTGGTCTCGG CGGAGGAGGT CTTCGAGCTG
CGCTTCCCGC ACCCCGACTG GGTGCCGCTG CAGACTCGGC AGTCCGGGCT CGAGGGCACC
GGCGAGATCC GGCTGCGCGA CCTGGTCAAG GAGAGCCTGC GGATGCGGCC GAGCCGGATC
ATCGTCGGCG AGGTCCGGGC CGAGGAGTGC CTGGACCTGC TGCTCGCCCT CAACGCCGGC
CTCCCGGGGA TGTGCACGAT CCATGCCAAC AGCGCCCGGG AGGCGCTGGT GAAGATGTGC
ACCCTGCCGC TGCTCGCCGG CGAGAACATC TCGGCGCGGT TCGTGGTCCC GACGGTGGCG
GCGAGCGTCG ACCTGGTCGT GCACCTCGGC GTCGACGAGC ACGGCGTCCG CCGGGTCAAC
GAGATCGTCG GCGTGCCGGG CCGGGTCGAG AACGACGTGA TCGAGGTCGA GCCGCTCTTC
GAACGCCACG GCGGCGACCT GCGCCGCACC GGCGGGATGC CACCACACCC CGAGCGCTAC
GAGCGGTTGG GCATCGACGT CCGCCGGGTG CTGGCCGAGG GGGCGTGA
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| Protein sequence | MSLTHPPAHP ATHPATHPAA RRTASAHEEL VEQLDLHVRE LVRREAVDPQ READLVRRIA
ESVVREHDER SLTGAVAPVS DVDSMVGELV ARVSGFGPLQ PLLDDPTVEE VWINDPSRVF
VARNGRHELT TLVLTSAQVQ ELVERMLKTS GRRIDISQPF VDAMLPEGHR LHVVLEGISR
GFSAVNIRKF VLRAARLRDL VELGSLTPAG AGFLESSVRA GLNVLVAGGT QAGKTTMLNC
LAAAIPGGDR VVSAEEVFEL RFPHPDWVPL QTRQSGLEGT GEIRLRDLVK ESLRMRPSRI
IVGEVRAEEC LDLLLALNAG LPGMCTIHAN SAREALVKMC TLPLLAGENI SARFVVPTVA
ASVDLVVHLG VDEHGVRRVN EIVGVPGRVE NDVIEVEPLF ERHGGDLRRT GGMPPHPERY
ERLGIDVRRV LAEGA
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