Gene Noca_0923 details

Gene Information

• Locus tag: Noca_0923
• ID: 4599606
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 968863
• End bp: 969573
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639775525
• Product: triple helix repeat-containing collagen
• Protein accession: YP_922133
• Protein GI: 119715168

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0470667
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAGTG TGCTCCGCTC GCGTCCGGCC GCCATCGCGG CCCTCATCAT CGCGCTGCTG 
TTCGCCGGTG GCACCGGCGC CGTCGCGCGC GGGTTGATCG GCACTCACGA CCTCCGCAAC 
GGTGCCGTCA CCAGCGCGAA GGTCGCGGAC GGCACGATCA CCACGAGGGA TCTCCGTCCC 
CATCTGGCCG ACCGCGTCCG CCGCGGGGGC TCGGCCGGTC CCGCCGGACC TCAGGGTGTC 
CAGGGTGAGC CGGGCCCGGC CGGCCCGCAA GGGGTTCCGG GCGAGGCCGG CCCACGCGGT 
GCCTCGGGCG AGCAGGGGGT ACCAGGTGTG CAGGGCGTGC AGGGGCCAGC GGGACCGGCC 
GGGGCGCCCG GCGGGTTCGC GTTCAGCGGT GACTCCTCGA GCGCCGCGCC GGACGCCGAC 
ATCATCGTGA CCGCCACCTG CTTCGAGGGA TCCGACCCGA ACCTCCAGGT CGTCGCTCTC 
GACAACGAGA ACCTGTTGAT CACCGGCCAG GTGACGACGT ACGACGGCAC CGGTGCGACC 
ACCACCGACG TCCTCGTGGA CGACACCGGC TACTGGAACC CGATGTGGGC CGCCGGCCTC 
ACGGTGATCT TCGACGGGGT TGTGGTCACC GCGACGGGTG AGTCCTACGC CGTGACGACG 
GTGATCCGCT CCAGCTGTCA GGGCCAGGGC ACCCTGATCC CGCTGGGCTG A 

 

Protein sequence

MTSVLRSRPA AIAALIIALL FAGGTGAVAR GLIGTHDLRN GAVTSAKVAD GTITTRDLRP 
HLADRVRRGG SAGPAGPQGV QGEPGPAGPQ GVPGEAGPRG ASGEQGVPGV QGVQGPAGPA 
GAPGGFAFSG DSSSAAPDAD IIVTATCFEG SDPNLQVVAL DNENLLITGQ VTTYDGTGAT 
TTDVLVDDTG YWNPMWAAGL TVIFDGVVVT ATGESYAVTT VIRSSCQGQG TLIPLG