| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0601 |
|---|
| Symbol | |
|---|
| ID | 4596194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 635378 |
|---|
| End bp | 636376 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639775209 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_921823 |
|---|
| Protein GI | 119714858 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CCGCGAAGAC GCCGGCGGCG TCGGCGCCGA CACCGACGTT GCGTGATCGG
CTCGATGAGT ACCTGGTGAT GCGCCGGGCG TTGGGGTTCC AGCTCAACGA CGTCGAGCGG
CAGGTCGGCC TGTTCTGCAC CTGGCTCGAA GCCCGCGGCC AGACGCAGAC GTTCACTATC
GATGAGGCGG TGACCTGGGC CCGGCTCAAC CCGGACGCGC ACCCCTCGTG GTGGGCGACC
CGACTGTCGT TGGTGCGGCG CTTTGCCGGC TACCTGAACG CGAACGACGT CGACGTCCCG
GTCATCCCGC GCGGGCTGCT ACCGGCCCCG AAGCCTCGAG CGGTGCCCTT CATCTACAGC
CAACACGACC TCGATGCGCT GCTCACCGCC TGCGACCGAG TGTTCACTGA CGAGCGGATC
GCCGCGACGA TGCGCACGGT CATTGGGCTG CTTGCCGCGA CGGGGCTGCG AATCGGGGAG
GCATTGAAGC TGCGCGTGGG CGACGTCGAC CACGTCAACG ATCTGTTGGT CATCAAGGCG
GCGAAGTCGG TTGAGCGGCT CGTCCCGCTG CACCCCACGA CGACGGCCGC GCTGATGGAC
TACATCACGT TGCCAGCCCG CACGGCGACC AACCCCGACC CCGATGGTCC GGTCTTCGTG
ACCGCCAACG GGACCGGGTA CATCTACGTG AGCTTCTACA AGATGTTCCG AGCAGTCCGG
GAGGAAGCCG GACTGACACC GCGTGGGAGA GCACGACCGC GCCTGCACGA CCTGAGACAC
ACCTTCGCCA CCGCGCACAT GACCGCGGCC TACGCCCACG ACGGTGACCC CGAGCGGGTG
TTGTCGCTGC TCGCGACCTG GCTCGGGCAC TCCGACGCCA CCCACACGTA CTGGTACCTG
TCCGCGACTG GCGAGCTCAT GGCCCTGGCC GCCGGCCGCC TTGAACTCAA CCCCGAAATC
GGTGCCGACA TCGATGCCGG CACAGGAGAG CCCTCATGA
|
|---|
| Protein sequence | MTAPAKTPAA SAPTPTLRDR LDEYLVMRRA LGFQLNDVER QVGLFCTWLE ARGQTQTFTI
DEAVTWARLN PDAHPSWWAT RLSLVRRFAG YLNANDVDVP VIPRGLLPAP KPRAVPFIYS
QHDLDALLTA CDRVFTDERI AATMRTVIGL LAATGLRIGE ALKLRVGDVD HVNDLLVIKA
AKSVERLVPL HPTTTAALMD YITLPARTAT NPDPDGPVFV TANGTGYIYV SFYKMFRAVR
EEAGLTPRGR ARPRLHDLRH TFATAHMTAA YAHDGDPERV LSLLATWLGH SDATHTYWYL
SATGELMALA AGRLELNPEI GADIDAGTGE PS
|
|---|
| |