Gene Noca_0124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_0124 
Symbol 
ID4597573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp137752 
End bp139167 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content75% 
IMG OID639774734 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_921356 
Protein GI119714391 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.55159 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCCGGAC CCGATGGCGT CCGGCTCGGT ACGGCGACCG GCCGCGCCGT CGTCCTCGCG 
GCGGTCCTCG GCTCGGGGAT GACGATGCTC GACGGCACCG TCGTGAACGT CGCGCTGCGC
ACGATCGGCG CGGACCTGGA CGCCTCGCTC CCCGAGCTGC AGTGGATCAC CAACGGCTAC
CTGCTCTCGA TGGCCAGCCT GATCCTGCTG GGCGGGTCGC TGGGCGACCG GTTCGGCCGG
CGCCGGGTGT TCGTGGTGGG CACGGTGTGG TTCGCCGTCG CCTCGCTCGC GTGCGGCTCG
GCGCCGACGC CGGAGGTCCT GATCGTCGCG CGGATCCTCC AGGGCGTCGG CGCGGCCCTG
CTCACGCCGG GCAGCCTCGC GATGATCCAG GGTGCCTTCG TCCGCGACGA CCGGGCCCAG
GCGATCGGCT CCTGGTCCGG GTTGACGAGC ATCGCGGCCG CCGTCGGGCC GCTCGTCGGC
GGCGCACTGG TGCAGTACGC CAGCTGGCGC TGGATCTTCC TGGTCAACCT GCCGATCGCG
ACGCTCACCG TCGTCGTCGC CCGCCGCGCG GTCCCGGAGA CGCGGGACCC GAACGCCCCC
CGGCGCTTCG ACGCCCTCGG CGCGGTGCTG GCCGCGCTCG CCCTCGGCGG CCTGACCTAC
GCGCTGATCG AGTGGGGTGG CGCCCTCGCG CCCTGGGCCG TGGTCGTCAC CGTCCTCGCG
GCTGCGGCGT ACCTCGTCGA CGAGCGCCGC AGCGACCACC CGATGCTGCC GCTCGGCATC
TTCGCCGACC GCACCTTCAC CGCCGCCAAC GCGATGACGA TGGTCGTCTA CGCCGCGCTC
GGTGCCGTGT TGTTCTTCCT CGTCCTGCAG CTGCAGACGG TGAGCGGGTA CGGCGCGCTC
GGCGCCGGCC TGGCCACTCT GCCGATCACG TTCTGCATGC TGCTGCTCGC CTCGCAGGGC
GGCCGGCTGG GCGCCCGGAT CGGCCCTCGC GTCCCGATGA GCCTCGGCCC GCTGGTGATG
GCCGCGGGCA CCCTGCTGCT GCTGCGCGTC GGCGCCGGGA CGACGTACTG GACCGACGTG
CTGCCCGGGC TGGTCGTCTT CGGGCTGGGG CTGGCACTGC TGGTCGCGCC GCTGACCGCC
ACCGTCCTGG CCGCCGTGGC CGACGAGCAC GCCGGGATCG CCAGCGGCGT CAACAACGCG
GTCGCCCGCG CCGGCTCGCT GCTGGCGGTG GCCGCGCTCC CGGCCGCGGT CGGGCTGCGC
GGCGAGGAGT ACGCCGACCC GGTGGCGTTC GACGCCGCCT ACGGCTCGGC GATCCTCGCG
TGCGCCGCGC TGCTCGCGCT GGGCGGCGTC GTCTCGTGGC TGAGCATCCG CGACCCGGGC
ATCGGCCGGA CCGCCGCGCC ACCGATCGGA AGGTAG
 
Protein sequence
MAGPDGVRLG TATGRAVVLA AVLGSGMTML DGTVVNVALR TIGADLDASL PELQWITNGY 
LLSMASLILL GGSLGDRFGR RRVFVVGTVW FAVASLACGS APTPEVLIVA RILQGVGAAL
LTPGSLAMIQ GAFVRDDRAQ AIGSWSGLTS IAAAVGPLVG GALVQYASWR WIFLVNLPIA
TLTVVVARRA VPETRDPNAP RRFDALGAVL AALALGGLTY ALIEWGGALA PWAVVVTVLA
AAAYLVDERR SDHPMLPLGI FADRTFTAAN AMTMVVYAAL GAVLFFLVLQ LQTVSGYGAL
GAGLATLPIT FCMLLLASQG GRLGARIGPR VPMSLGPLVM AAGTLLLLRV GAGTTYWTDV
LPGLVVFGLG LALLVAPLTA TVLAAVADEH AGIASGVNNA VARAGSLLAV AALPAAVGLR
GEEYADPVAF DAAYGSAILA CAALLALGGV VSWLSIRDPG IGRTAAPPIG R