Gene Noca_0106 details

Gene Information

• Locus tag: Noca_0106
• ID: 4600079
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 119154
• End bp: 119783
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 639774716
• Product: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
• Protein accession: YP_921338
• Protein GI: 119714373
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1876] D-alanyl-D-alanine carboxypeptidase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCAAG GGTGCGTGCT TCCTAGCGTC GATCGGGTGA CCAGTGCTCG CATCCACCAC 
CCCACCAGCC GCGGCGCCGT CGTCGCGCTC CTCGGTGCCC TGCTGACTCT CGCCGCCTGC 
GGCGACGGGA CCGGGGCCGC CCCCGCTGCA ACGCAGGGGC GACCCCAGGC TCACGAGCGG 
TCGGCAGCGC CGGAGTCGGC CCGCCTCGAC CGCGTCGGTC TCGAACCGGG CCGCCTGGGC 
ATCGGCCGGG TCGACGTCGC CCGGCTCGAG CCGGACCTGC GCGCTGCCCT GGAGGAGGCC 
ACCCGGGCTG CCGAGGCGGA CGGAGTCGTG ATCGAGGTGA CCAGCGGGTG GCGCAGCTGG 
GAGCACCAGG AGCGGCTGCT CGACGAGGCG GTGGTGAAGT ACGGAAGCCT GGACGAAGCG 
CTCGAGTGCG TCTCGACCCC GGAGGCCTCG GCCCACGTGA CGGGGGACGC GGTCGACATC 
GGCCCGGCCG AGGCAGCCGG TTGGCTGAGC CGGCACGGCT CGGCGTACGG CCTGTGCCAG 
ATCTTCGCCA ACGAGGACTG GCACTTCGAG CTCGCGACGA CGCCCGGCGG CGAATGCCCG 
CCGATGTACG CCGACGCCAG CCAGCGCTAG 

 

Protein sequence

MPQGCVLPSV DRVTSARIHH PTSRGAVVAL LGALLTLAAC GDGTGAAPAA TQGRPQAHER 
SAAPESARLD RVGLEPGRLG IGRVDVARLE PDLRAALEEA TRAAEADGVV IEVTSGWRSW 
EHQERLLDEA VVKYGSLDEA LECVSTPEAS AHVTGDAVDI GPAEAAGWLS RHGSAYGLCQ 
IFANEDWHFE LATTPGGECP PMYADASQR