| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1317 |
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| Symbol | |
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| ID | 4601997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermofilum pendens Hrk 5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008698 |
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| Strand | - |
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| Start bp | 1264915 |
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| End bp | 1265802 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639774092 |
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| Product | CRISPR-associated RAMP Cmr6 family protein |
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| Protein accession | YP_920717 |
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| Protein GI | 119720222 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1604] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01898] CRISPR-associated RAMP protein, Cmr6 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00379803 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACCTGC TGGGCCTGGT TTACGGATAC GTCGACGAGC TCCTGAAGAA CCCGGAGGCG
GAGAAGGAGG AGCTGAGGAG GAGGCTCATC GAGAGAATAG TCGAGAACTA CTCGCGGGGA
CGCGAACTGG ACGAGAAGCT GAGGCTGTCC AGGGAGAGGC TCGAGAGCCT AGCCGCGGGG
CTCGCGCTGG CGGGCTTCCA CGTCTTCGTG GTTGACGCGA AGCTCTCCAC GATGGGAGCC
GTCGGGGTGT CGCACGGGGT TTTGAGAAGC GTGTTCGAGG TGGGGGTTAG CTGGGACCAC
GTGCTGGACC TGCCGTTCAT ACCGGGCTCC AGCGTCAAGG GCGCCGTGAG GGCGGTCGCA
GAGCGCGCCT CGAGGGACGA CGCGGACGTC CTGTTCGGGA GGGGCGGGGA CTCGGGGTGG
GCCGGGCTAC TGCTCTTCTT CGACGCCTAC CCCGTCGAGG CCGGGGACAG GCTCCTCGAG
CCAGACATCG TGACGCCGCA CTACAGCAGG GGCGGGAGGC CCGTGAGGTT CGAGTACGAG
GTCGAGCCCG TGCCCGTGGC GCACGTCTCG ATCGCGCCTG GGGCCGTCTT CAGGTTCGTC
GTCGCGGTCG AGCCGGGAGG GGGCGTCCTC CACGAGGAGG TGGACCGCGC CCTCGCGAAC
ATCTGCGGGA GGCTCGGCGT CCAGGGCGGG GGGCCGGCGT CGCTCCTGCT AGGCCTCTTG
GAGTACGCGC TCGCCAGCGG CGTTGGGGCG AGGACGAGCC AGGGCTACGG GAGGTTCGAG
GTCGTCTCGC GCTCCGCGGT GATCAACGGG TCGGAGCACA GGACGCCCCT CCGGGTGAAG
CCCGCGAGGG CTAGGAGGGG CAGGTCCACT CGTCCCGGTG CGGGGTGA
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| Protein sequence | MDLLGLVYGY VDELLKNPEA EKEELRRRLI ERIVENYSRG RELDEKLRLS RERLESLAAG
LALAGFHVFV VDAKLSTMGA VGVSHGVLRS VFEVGVSWDH VLDLPFIPGS SVKGAVRAVA
ERASRDDADV LFGRGGDSGW AGLLLFFDAY PVEAGDRLLE PDIVTPHYSR GGRPVRFEYE
VEPVPVAHVS IAPGAVFRFV VAVEPGGGVL HEEVDRALAN ICGRLGVQGG GPASLLLGLL
EYALASGVGA RTSQGYGRFE VVSRSAVING SEHRTPLRVK PARARRGRST RPGAG
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