| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1231 |
|---|
| Symbol | |
|---|
| ID | 4601163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1168671 |
|---|
| End bp | 1169714 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639774007 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_920632 |
|---|
| Protein GI | 119720137 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0371] Glycerol dehydrogenase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0263473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGGGCTG AGCTCCCGAA GAGGGTTGTA GTCGAGAGGG GAGCCTTGCA GTTTCTACCC
GAGGTTCTAC GCGAGCTTGG ATGCTCGAAG ACCGTAGTCG TAACGGATAG TGGTGTTTGG
AGCGTTGTGG GGAGCGTCGT CGAGGGTGCT TTAAGGGGGC TGGCCTACGA GGTCGTATAT
ATCGAGGCGG CGGATAACTC GAACGTTGAG AGAGCGCGCT CGGCGGCTAG GAGGGTGGAG
GCTTGCGCCG TGGCTGGGCT GGGGGGCGGG CGGCCCGTCG ACGTCGCGAA GTACGCGGCG
TTCATGGAGG GGCTCCCCTT CGTGAGCGTG CCCACGGCGA TAAGCCACGA CGGCTTCGCC
TCGCCCATAG TGGCGCTCAA GGACCCGGAG GGGAACCCCC TGTCTATATT CACGAGGCCG
CCCGCCGCCG TGCTCGTGGA CCTGGCGGTC GTGTCGAGGG CTCCGAGGAG GCTCCTCGCG
AGCGGGGTCG GGGACATAGT CGGAAAGGTT ACCAGCGTCG CGGACGCCAG GCTTGCCCAG
AGGCTTACAG GTGAGGAGGT CCCGGAGGTA GCCCTCAGGA TGGCGGAGAC GGCGGCCAGG
ATGGTCCTGG ACGAGGTGGA CGAGATAGCT TCGTGGACTG AGAGGGGTGT AGGCGTCCTG
GCGCAGGCCG GGCTACTCGC AGGCATGGCC ATGGCGGTGG CCGGTAGCTC GAGGCCCTGT
AGCGGCTCGG AGCACCTCTT CAGCCACTCC CTGGACAAGT ATGTGCCGTG GAAGAAGAGC
CTCCACGGGG AGCAGGTAGG CGTGGGCGCG ATCATAGCGT CGTACCTCCA CGGGTTCAAC
TGGAGGGTTA TCCGGGACGC CCTCGCGAAG GTCGGGGCGC CGACGACCGT GGAGGGGCTC
GGGGTAACCG GGGAGGACGC GGTCCGCGCC CTCCTCAAGG CCAGGGAGCT GAGAAAGAGG
TTCACGATCC TCGACGTAGT CGAGCTCAAC GAGGGGCTCG CCTGGAAGGT GCTCAGGGAA
ACCGGGGTAG CGCCCACGGC CTAA
|
|---|
| Protein sequence | MRAELPKRVV VERGALQFLP EVLRELGCSK TVVVTDSGVW SVVGSVVEGA LRGLAYEVVY
IEAADNSNVE RARSAARRVE ACAVAGLGGG RPVDVAKYAA FMEGLPFVSV PTAISHDGFA
SPIVALKDPE GNPLSIFTRP PAAVLVDLAV VSRAPRRLLA SGVGDIVGKV TSVADARLAQ
RLTGEEVPEV ALRMAETAAR MVLDEVDEIA SWTERGVGVL AQAGLLAGMA MAVAGSSRPC
SGSEHLFSHS LDKYVPWKKS LHGEQVGVGA IIASYLHGFN WRVIRDALAK VGAPTTVEGL
GVTGEDAVRA LLKARELRKR FTILDVVELN EGLAWKVLRE TGVAPTA
|
|---|
| |