Gene Tpen_1198 details

Gene Information

• Locus tag: Tpen_1198
• ID: 4600390
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: -
• Start bp: 1136899
• End bp: 1137543
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 639773974
• Product: TrkA domain-containing protein
• Protein accession: YP_920599
• Protein GI: 119720104
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0569] K+ transport systems, NAD-binding component

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGTCG CGGTGATAGG CGGGGGAAGG GTCGGCTACT CGATAGCGGA GTTCTTCTCC 
AAGAGGGGCG ACAGGGTTGT CGTCGTGGAG AAAAACGAGA AGGTGTGCGG CGAGCTTGCC 
GGGAGCCTCG ACGTCACCGT TTACTGCGGT GACGCCAGGT CTATCAGGCT ACTCGAGGAG 
GCCGGGGTAA ACAAGGCCGA CGTCCTCTTC GCGGTGTCGG GTAGCGACTC CCTAAACATA 
CGCGTAGCGT CTGTTGCCAA GAAGAGGTTC GGGGTACCGA GGGTTGTCGT CAGGGTGAAC 
CACGCCGAGA ACAAGGAGAA GGCGGCCCAG TCGGGGGCAG ACGAGGTCAT ATGCCTGGAC 
GAGGTGGCAG AGCTCTTCGT AAGGGCTGTG ACAGAGGTAG ACTACAGGGT TCTCTTCAAG 
CATGGGGGTT TCGCGGTCGT AGAGATCAGA GTGTTGCCGG ACTCCCCGGC GATAGGCAAG 
CCCCTGCGGG AGCTCGTCGA GAAGGGCTTG AAAGTGGTGG CGGTCGTGCG GGACGGGAGC 
CTCGTGGAGG CGGGGGAAGA CCTCGTGTTG GAAGCCGACG ATAGGCTCGT GCTCGCCGGG 
AGAGAGGAAG CAATAAATGA GACTAGGCAG GATATTCTTG GATAA 

 

Protein sequence

MFVAVIGGGR VGYSIAEFFS KRGDRVVVVE KNEKVCGELA GSLDVTVYCG DARSIRLLEE 
AGVNKADVLF AVSGSDSLNI RVASVAKKRF GVPRVVVRVN HAENKEKAAQ SGADEVICLD 
EVAELFVRAV TEVDYRVLFK HGGFAVVEIR VLPDSPAIGK PLRELVEKGL KVVAVVRDGS 
LVEAGEDLVL EADDRLVLAG REEAINETRQ DILG