Gene Tpen_1079 details

Gene Information

• Locus tag: Tpen_1079
• ID: 4601691
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 1016611
• End bp: 1017126
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 639773856
• Product: NADH-quinone oxidoreductase, B subunit
• Protein accession: YP_920481
• Protein GI: 119719986
• COG category: [C] Energy production and conversion
• COG ID: [COG0377] NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases
• TIGRFAM ID: [TIGR01957] NADH-quinone oxidoreductase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.231254
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGCTGCC CCCTCGGCTT CGTAATGGTG GGTAGGCTCG AAGAGTCCGC CAGAAAGGCT 
GCGCAGTGGC TCGTAGAGAA AACGCCGATA AGGTCCCTGA GGGACTGGGC GATAACATTC 
AGCCTGTGGC CTGTCCACTT CACCACTTCT TGTTGCGGCG CGGAATTTGC CGCTACCTCT 
GCTCCGCGCT TCGACGCCGA GAGGTTCGGC TTCCTACCGT TCAACTCGCC CCGCCAGACG 
AACCTGATGG TTATTGAGGG TACTCTTACG AAGAAGATGG GGGAGGCCGC CAAGATAGTC 
TATGACCAGA TGCCGTGGCC AAAGTTCGTC ATAGCCATGG GTGCATGCGC GATAGACGGC 
GGCCTGTTCT ACAACAGCTA TAACATAGTG AGGCCTAAGG ACATACTCCC CGTGGAGTAC 
TTCATTCCCG GTTGCCCGCC CAGGCCCGAG GCAGTAGCCC AGGCGATAAT CATGCTTCAA 
GAGAAGGTGA GGAAGGGTGA GTGGAGAAAA GCCTAG 

 

Protein sequence

MSCPLGFVMV GRLEESARKA AQWLVEKTPI RSLRDWAITF SLWPVHFTTS CCGAEFAATS 
APRFDAERFG FLPFNSPRQT NLMVIEGTLT KKMGEAAKIV YDQMPWPKFV IAMGACAIDG 
GLFYNSYNIV RPKDILPVEY FIPGCPPRPE AVAQAIIMLQ EKVRKGEWRK A