| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1011 |
|---|
| Symbol | |
|---|
| ID | 4600684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 955988 |
|---|
| End bp | 956893 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639773789 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_920414 |
|---|
| Protein GI | 119719919 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACG TGAGGCCCTT CGACCCGTGG AGGTCTACGA GCCTCTGCAC GTGCCCCTTC
AAGTACACCG TGAACCCCTA CACCGGGTGT AGCCACGGGT GCCTCTACTG CTACGCTTCC
AGCTACATCA GGGACTTCTT CAACCCGAGG CCCAAGAAAG ACTTCCTCAA GGTAGTCTAC
GGGGACCTCA GGAGGATACC CGAGGGCTCC ATAGTGAACA TCTCCAGCAG CAGCGACCCC
TACCAGCCCC TGGAGTCGAA GTACGGGTAT ACGCGGAGGT TCCTGGAGCT CGCGGTCGGG
CGGTACGTCG TAGAGGTAGT CACGAAGTCC GACCTCGTAG CGAGGGACGC CGACCTGCTG
GCGAGGGGGC AGAGCGTGGT CTCAGTGACT ATAACCACCA TGGACAACGA GGTCGCGAAG
AGGCTTGAGC CGGGGGCTCC CCCGCCGAGT AGGAGGGTGA AAGCCGTGGA GAGGCTTTCC
GAGGCCGGCG TACCCGTGGT GCTACGCCTG GACCCGCTGA TACCCGGGCT CAACGACTCA
GAGGACTCCG TGAGGGAAGT GGTAGAGGCG GCCGTGGGCG CCGGGGCTAG GCACGTAGTT
TCCTCGACGT ACAAGGTTAA GCCGGACAAC CTGGCCCGCC TCCTCAAAGC TTTCCCGGAG
CTGGAGCCGC GCCTGAGGAA GCTGTACTTC GAGGGCGGCG ACAGGCTACA CGGCTACGTG
TACGCCGAGA AGAGCTACAG GTACAGGGTC CTCTCCACGG TCAGGGAGAT AGCCCACGGG
CTCGGGGCTA CGTTCGCCGT GTGCCGGGAG GGCTTCTACG ACTTGATAGA CAGGGGGGTT
AGCTGCGACG GCACACACCT TGCTCGTGGA CGCGGCGCCC ATGCTGGGGA GGCGCGCCCG
GGGTAG
|
|---|
| Protein sequence | MAYVRPFDPW RSTSLCTCPF KYTVNPYTGC SHGCLYCYAS SYIRDFFNPR PKKDFLKVVY
GDLRRIPEGS IVNISSSSDP YQPLESKYGY TRRFLELAVG RYVVEVVTKS DLVARDADLL
ARGQSVVSVT ITTMDNEVAK RLEPGAPPPS RRVKAVERLS EAGVPVVLRL DPLIPGLNDS
EDSVREVVEA AVGAGARHVV SSTYKVKPDN LARLLKAFPE LEPRLRKLYF EGGDRLHGYV
YAEKSYRYRV LSTVREIAHG LGATFAVCRE GFYDLIDRGV SCDGTHLARG RGAHAGEARP
G
|
|---|
| |