| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0877 |
|---|
| Symbol | |
|---|
| ID | 4600359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 825745 |
|---|
| End bp | 826485 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639773655 |
|---|
| Product | ERCC4 domain-containing protein |
|---|
| Protein accession | YP_920281 |
|---|
| Protein GI | 119719786 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1948] ERCC4-type nuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTAC CTGTTGTTAT TGTGGATGAC CGTGAGAGAA GGTCTCCCGT GCTCTCCGAG
CTGGCTAGGC TGGGCGTTAG GTACTCGGTT GCCAGGCTAG AGGTCGGGGA CTACGATGTC
GGCGGCGTTT ACGGGGTGGA GCGGAAGAGT TCTGGCGACT TCGTGAACTC GGTTATCGAT
GGGAGGCTTT TCGAGCAGGC AAAGTACCTT CGGGAGTCGT ACGAGACTGC TATAATAGTC
GTGGAGGGCG ATCTATCGGA GGAGGTTAGC CGGAGGCAAG TATCCCTGAA CCCTCTTTTC
GGAGCTCTAG CGGCGCTGGC CGAGAACGGG GTCTCCGTTC TCCAGGTTAG GAGCTACGCG
GAGACGGCGC TTCTGATATA CGTGCTGTGG AAGAGGCTTC AGAAACACGG GTCAAGCTTT
CTCGTTAGGT CGAAGAAGAA GGTCTTCAAG GAGTCTACCA GCATACCGGT AGTACAGCTC
AATCTCATAG CGAGCCTGCC GGGGATAAGC AGGGAGATGG CGGACAGGAT ACTGAGAGAG
TTTCACACCC CTAGACGCTT CTTCACGGCG ACACCGGCGG AGCTTCGCAG AATCCACGGG
CTCGGGCCTA AGCGGATACA GAAGATACTC CAGGTCCTAG ACACTTCCTA CGTGTCCGCT
AAGATGCTGA GCGACTCCCG CAAAGCCGAG GCGAACAGCA ACGAAGAAGA GCTTGACCAA
GCTCGCGGGG AGGGCGAGTA A
|
|---|
| Protein sequence | MQVPVVIVDD RERRSPVLSE LARLGVRYSV ARLEVGDYDV GGVYGVERKS SGDFVNSVID
GRLFEQAKYL RESYETAIIV VEGDLSEEVS RRQVSLNPLF GALAALAENG VSVLQVRSYA
ETALLIYVLW KRLQKHGSSF LVRSKKKVFK ESTSIPVVQL NLIASLPGIS REMADRILRE
FHTPRRFFTA TPAELRRIHG LGPKRIQKIL QVLDTSYVSA KMLSDSRKAE ANSNEEELDQ
ARGEGE
|
|---|
| |