| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0728 |
|---|
| Symbol | |
|---|
| ID | 4600848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 677602 |
|---|
| End bp | 679017 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639773504 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_920133 |
|---|
| Protein GI | 119719638 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.884524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGTTG AAGACTTCTT CAAGAAAGCA GGTCTGACGC CCCGCCCTTT ACAGCTCGAG
ACGGCTAGGG AGCTCGCCTC CCAGCTACCC GGAAACGTCG GGCTCGAAGC GCCCCCCGGT
TGGGGGAAGA CTATCGCAGT CCTCGCGGCG CTAGCCTCCG CGGGCGCCCT CCCAGCGGTG
TGGAGGGTCA GAACCTACCC GCAGGCGCGG AGGATCTCGG AAGACGTTGC CGTCGCGAAC
CTCAAGCCCT TCGTAGCTGG CGGCCGCGAG AGGACGTGCC CCCTCGCGGG CGAGTTGAGG
GCTAACGTGC ACCACTACTG CAGGTACCTG AAGCACAAGT GCCCCTACTT CAAGTTGCTC
GTGGAGTCTC CGGTGCGACT AGGCTACGTG CCGTCGTACG AAGACCTGCC ACCCGAGGTC
TGCCGCTACT ACCTACAGGA GAACGTGGGA GCGGACGTCT ACATAGCCAC GTACAACACG
GGGCTCAACT TCGGCGGAGT ACAGACCGTG GTCGACGAGG CCCACAACGC CGTCTCGGTG
CAGTCCATGC CACTCTCAAA ACTGAGAGAG GGGCTAGCCG AGCTGGCACA AGTTGCCGGT
AGCGAGGAGC TCCTCGACAA AGTCGAGAAG TTTGACGTCG TGACCAACGT CCGGGTATAC
CTAGAGGAGC TTACAGCCGC GCTCGTCGAG GCGCTTGAGA AGGGCGCAAG ACCGAGAAGC
GCACCCAAAG TGTTAAGCTT CATACGTGAG GCACCCTTCC TGTGGAGGGA GGGAGAGGAG
GTCTACACGC TGAAAGTCTA CAGGCCTAGA GGGCCCTCGC TCTACGTATC GGCAACGCTC
ACCCCCGTGG CGCACGTATT CAACGTACCA GTGGTCTCAG TGCCGTGGCA GAAGAAATAC
ACGGCCGCCA TTACCACGTG GCTCACAACG GCGTACAGAG AGTACGGACC ACCCCTAGCC
AGGGAGTACA ACAACCTCCT GTTCTTCCTG AGGCGCTTTT TCGACAGGAT ACTCGTTTTC
GCGACGTCAA GGGTCGCCAA GACCCTTTCA GCCGACACTA CGAACCCTGA GGAATGGAAC
AGAGGCGTAC TGTTGTTGTT ATCCCACGGG AGGTACGCTG AAGGCGTAGA CCTACCCGCC
GACTGCGTCG TCATGGCGGG AGCCCCCTAC CTACCCCCGT ACGTGTCAGC AAGACTGGCG
GCTGTGGGGC TAAAGCCGGA CGACGTTGTG GCTATAACGA CGGTGCAGAA CGTGGGGCGG
GCTACGAGGA CGCCATCAGC GTCACCCTTC ATCGTACTCG CCGATGAGCG CTACGCGCGC
CTCTCGATCC CGTACTTCGA CGTAGTTGAA GTTCACAGCT TGAAGGATCT CGAAGCAATA
ATCACCAAGC TGGTACGCGT ACATGCCACG CAGTAG
|
|---|
| Protein sequence | MNVEDFFKKA GLTPRPLQLE TARELASQLP GNVGLEAPPG WGKTIAVLAA LASAGALPAV
WRVRTYPQAR RISEDVAVAN LKPFVAGGRE RTCPLAGELR ANVHHYCRYL KHKCPYFKLL
VESPVRLGYV PSYEDLPPEV CRYYLQENVG ADVYIATYNT GLNFGGVQTV VDEAHNAVSV
QSMPLSKLRE GLAELAQVAG SEELLDKVEK FDVVTNVRVY LEELTAALVE ALEKGARPRS
APKVLSFIRE APFLWREGEE VYTLKVYRPR GPSLYVSATL TPVAHVFNVP VVSVPWQKKY
TAAITTWLTT AYREYGPPLA REYNNLLFFL RRFFDRILVF ATSRVAKTLS ADTTNPEEWN
RGVLLLLSHG RYAEGVDLPA DCVVMAGAPY LPPYVSARLA AVGLKPDDVV AITTVQNVGR
ATRTPSASPF IVLADERYAR LSIPYFDVVE VHSLKDLEAI ITKLVRVHAT Q
|
|---|
| |