| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0647 |
|---|
| Symbol | |
|---|
| ID | 4601513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 598356 |
|---|
| End bp | 599657 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639773419 |
|---|
| Product | elongation factor 1-alpha |
|---|
| Protein accession | YP_920052 |
|---|
| Protein GI | 119719557 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00483] translation elongation factor EF-1 alpha
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000513743 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGA AAAAGCCACA CTTAAACCTG GTAGTGATAG GACACATCGA CCACGGAAAA
AGCACCCTAA TGGGAAGACT CCTCTACGAG ATAGGCGCGG TAGACCCCAG GCTGATTCAG
CAGTACGAGG AGGAAGCGAA AAAGATGGGT AGGGAGACGT GGAAGTACGC TTGGGTTCTA
GACAAGCTCA AGGAGGAGAG AGAGAAGGGT ATCACAATCG ACCTCGGCTT CTACAAGTTC
GAGACTAAGA AGTACTTCTT CACGCTGATT GACGCGCCGG GTCACAGGGA CTTCGTTAAG
AACATGATAA CCGGAGCTAG CCAGGCTGAC GTCGCATTGC TCGTCGTATC TGCTAAGGAG
GGTGAATTCG AGGCTGGCAT AAGCCCTGCT GGTCAGACCA GGGAGCACGT CTTCCTGGCG
AAGACGATGG GCGTAGACCA GCTGGTCGTG GCTATAAACA AGATGGACAC GGTTAACTAC
AGCAAGGAGA GGTACGAGGA AATTAAGAAC CAGCTGATAA GGTTGCTCCG AATGGTCGGC
TACAAGGTGG ACGAGATACC GTTCATACCG ACTTCGGCGT GGGAAGGCGT GAACGTGTCC
AAGAGGACCC CCGAGAAGAC TCCGTGGTAC GACGGGCCAT GCCTCTACGA GGCGTTCGAC
TTCTTCAAGG AGCCTCCGAG GCCCATAGAC AAGCCGCTAA GGATACCCAT ACAGGACGTC
TACAGCATTA AAGGAGTAGG CACAGTTCCC GTTGGGAGAG TCGAGACAGG CGTACTCAAA
GTTGGAGACA AGATAATCAT CAACCCGCCG AAAGCAGTGG GAGAAGTCAA ATCCATAGAG
ACCCACCACA CGCCGCTCCA GGAGGCTATA CCAGGGGACA ACATAGGTTT CAACGTGAAG
GGCGTTGAAA AATCTCAGTT GCGGCGTGGC GACGTGGCAG GACATACAAC GAACCCGCCG
ACTGTTGCGG AAGAATTCAC AGGTAGGATC TTCGTCCTGT ACCACCCGAC GGCCATCGCG
GCAGGCTACA CACCGGTGCT GCACATACAC ACGGCGACCG TCCCGGTAAC GTTTGAGGAG
CTACTTCAGA AGCTTGACCC AAGGACGGGT AGCGTTGCAG AGGAGAAGCC GCAGTACATT
AAGCAGGGTG ACTCCGCCAT CGTAAGGTTC AAACCGAGGA AGCCGGTCGT CGTGGAGAAG
TACTCTGAGT TCCCACCACT AGGCAGGTTC GCCATTAGAG ACTCTGGCCG CACCATTGCT
GCCGGAGTAG TAATCGACGT GAAGAAAGCC GAAGGCTATT AA
|
|---|
| Protein sequence | MSEKKPHLNL VVIGHIDHGK STLMGRLLYE IGAVDPRLIQ QYEEEAKKMG RETWKYAWVL
DKLKEEREKG ITIDLGFYKF ETKKYFFTLI DAPGHRDFVK NMITGASQAD VALLVVSAKE
GEFEAGISPA GQTREHVFLA KTMGVDQLVV AINKMDTVNY SKERYEEIKN QLIRLLRMVG
YKVDEIPFIP TSAWEGVNVS KRTPEKTPWY DGPCLYEAFD FFKEPPRPID KPLRIPIQDV
YSIKGVGTVP VGRVETGVLK VGDKIIINPP KAVGEVKSIE THHTPLQEAI PGDNIGFNVK
GVEKSQLRRG DVAGHTTNPP TVAEEFTGRI FVLYHPTAIA AGYTPVLHIH TATVPVTFEE
LLQKLDPRTG SVAEEKPQYI KQGDSAIVRF KPRKPVVVEK YSEFPPLGRF AIRDSGRTIA
AGVVIDVKKA EGY
|
|---|
| |