| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0584 |
|---|
| Symbol | |
|---|
| ID | 4600699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 535094 |
|---|
| End bp | 535810 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639773356 |
|---|
| Product | proteasome subunit alpha |
|---|
| Protein accession | YP_919992 |
|---|
| Protein GI | 119719497 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0638] 20S proteasome, alpha and beta subunits |
|---|
| TIGRFAM ID | [TIGR03633] proteasome endopeptidase complex, archaeal, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCCGG CTGCTCCTAT GGCTGGTTAC GATAGAGCCA TCACGATATT CAGTCCTGAG
GGCAGGCTGT ACCAGGTTGA GTACGCCTTT GAGGCTGTAA AGCGCGGTAT GACCGCGCTC
GGCGTTAAGG CTGTTGACGG CGTTGTGCTG GCTGTTGAAA AGAGGAGCGC TTCGCCTCTA
GTAGAGGGCA CCGAGAAGAT AAAGAAGATA GATAGCCATG TCGGCGTCGC GTTTGCCGGG
CTCTTCGGTG ATGCCCGGGT CTTGATAGAC CAGGCGAGGA TATACGCGCA GTCCCACAGG
CTTGTGTACG GTGAGCCGAT ACCGATAGAG TTGCTTGTGA AAAGGATATG CGACATAAAA
CAGGTGTACA CGCAGCACGG CGGTGTGCGC CCCTTCGGGG TAGCTTTCCT TTTCGCAGGC
GTTGACCGAA AGGGACCCCA CCTCATCCAA ACGGATCCCG GCGGTACATA CCTGAGGTGC
AAGGCCCGCG CGATAGGTGC GGGTGCCCAG AAAGCCCTAG ACTTGTTTGT GAAGGAGTAC
CACGACGACA TAAAAATCGA AGAAGCTACG CTACTAGCCT TGAGAGGGCT TAAGGAGGCA
ATGGAAGACG GCTTCACACC GGAAAACATC GAGCTTGCCC GGATCGATGT CTACACGAAG
GAGTTCAAAA TCTTCTCTAC CGAGGAGCTG GCGAAACTTT TCGAGAAACT ACGTTGA
|
|---|
| Protein sequence | MFPAAPMAGY DRAITIFSPE GRLYQVEYAF EAVKRGMTAL GVKAVDGVVL AVEKRSASPL
VEGTEKIKKI DSHVGVAFAG LFGDARVLID QARIYAQSHR LVYGEPIPIE LLVKRICDIK
QVYTQHGGVR PFGVAFLFAG VDRKGPHLIQ TDPGGTYLRC KARAIGAGAQ KALDLFVKEY
HDDIKIEEAT LLALRGLKEA MEDGFTPENI ELARIDVYTK EFKIFSTEEL AKLFEKLR
|
|---|
| |