| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0580 |
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| Symbol | |
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| ID | 4600695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermofilum pendens Hrk 5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008698 |
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| Strand | - |
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| Start bp | 532055 |
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| End bp | 532873 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639773352 |
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| Product | exosome complex RNA-binding protein Rrp42 |
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| Protein accession | YP_919988 |
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| Protein GI | 119719493 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2123] RNase PH-related exoribonuclease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGGCTGAGG CTCGAACATT CGTTCCTTCC GTGAAAAAGG AGGTTATACT GGCCTCCCTT
GCTAAGGGCG AAAGGCTCGA CGGTAGGAAA GCGGACCAGT ACAGGGAGAT AAGGCTCGAG
AAGGGTATTA TAGGCAAAGC TGACGGCTCG GCAAGAGTAT TCCTCGGCTC AACCCAGGTG
ATTGCCGGAG TTAAGCTGGC TATAGGGACC CCGTTTCCCG ACGCACCGAA CGAGGGAGTA
CAAATAGTCA ACGCCGAGCT GTCTCCCGTG GCTTCCCCGT TTTTCGAACC GGGACCCCCC
GGAGAGGAGG ACATTGAACT GGCGAGAGTC GTGGACAGAG GGTTTAGGAG TGCGAAAGTC
GTAGACTTGG CAAAGCTCTC CATAATACCC TCCGCGAAGT GCTGGACTCT CTACATAGAC
ATATACCCCC TCGACCACGA TGGAAACCTT GTAGATGCAG CAGGACTTGC AGCGCTACTC
GCCCTACTAG ACACAAAGCT CCCCCGAACC TCCGTCCAGG AAAATAAGAT CGCTGTTCTC
GACGAGAAAG ACCCCCTACC CATCAACACG CTGGTCGTCT ATGTAACCGT TGCCAAGATA
GGCGAGTACC TAGTAGTAGA CCCAACTCTC GAAGAGGAAC TCACAGCCGA CGCAAAGATA
ACCTTCGGCA TCACGGAGAG AGGCGAGATC TGCGCAATAC AGAAAAGCGG AGAGGGATCC
TTCAGGCCAG ACGAGGTTCT CCGAGCTCGA GACATGGCGT TAAAGGCTTC GTCAACCCTC
TTCGAGGCTA TAAAGAAAGC AGTGGAGCAA AAACAATAA
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| Protein sequence | MAEARTFVPS VKKEVILASL AKGERLDGRK ADQYREIRLE KGIIGKADGS ARVFLGSTQV
IAGVKLAIGT PFPDAPNEGV QIVNAELSPV ASPFFEPGPP GEEDIELARV VDRGFRSAKV
VDLAKLSIIP SAKCWTLYID IYPLDHDGNL VDAAGLAALL ALLDTKLPRT SVQENKIAVL
DEKDPLPINT LVVYVTVAKI GEYLVVDPTL EEELTADAKI TFGITERGEI CAIQKSGEGS
FRPDEVLRAR DMALKASSTL FEAIKKAVEQ KQ
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