Gene Tpen_0521 details

Gene Information

• Locus tag: Tpen_0521
• ID: 4601359
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 473517
• End bp: 474083
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 639773290
• Product: RNA-binding S1 domain-containing protein
• Protein accession: YP_919930
• Protein GI: 119719435
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1096] Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGGGAAG ACAGGGTAGT GATCCCCGGA GAAAACGTCG GCGTAGCGGA AGAGTACTTG 
CCGGGTGAAA ACGTATATGT TGACGAGGAG ACTGGCGACT TAAAAGCCAA GAGGGTCGGC 
GTACTGAAAG AGGAGAGAGC TCAGCACATC GTCAAGGTTT TTCCCTTCAA GCCCGACGGT 
CAGCTCGGGA AGGGCGATGT GGTTTACGCT GTAGTCAAGC AGATAAGAGA CCCCGTAGCT 
ATAGTCGAGA TTTTCTACGT TGAAAACAAA CGTAGGAAAC TGATACCCCC GCTAACCGGG 
ATACTGCACG TGTCTAACGC AAGTAGCTCG AGGGTTCGTC TACTCTCGGA CGTGATAGGC 
TACGGGGACG TAATAAGAGC GACTATAGCT GACGAAGGAG GACCTCCTTA CTACCTCTCC 
ATAAGGGGGA GGGAGTTTGG AGTCGTCGTG GCTAAGTGCC CCAGCTGCAT GACACCAATG 
AGAAAGCGCG GGGTAATACT GCTCTGCCCG AACTGCAGGT ATAAGACCCG TAGGAGAAAG 
GTGAGCTCTA GGTACATGCT GAAGTAG 

 

Protein sequence

MREDRVVIPG ENVGVAEEYL PGENVYVDEE TGDLKAKRVG VLKEERAQHI VKVFPFKPDG 
QLGKGDVVYA VVKQIRDPVA IVEIFYVENK RRKLIPPLTG ILHVSNASSS RVRLLSDVIG 
YGDVIRATIA DEGGPPYYLS IRGREFGVVV AKCPSCMTPM RKRGVILLCP NCRYKTRRRK 
VSSRYMLK