Gene Tpen_0309 details

Gene Information

• Locus tag: Tpen_0309
• ID: 4601712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: +
• Start bp: 275102
• End bp: 277021
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 639773069
• Product: beta-lactamase domain-containing protein
• Protein accession: YP_919721
• Protein GI: 119719226
• COG category: [R] General function prediction only
• COG ID: [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain
• TIGRFAM ID: [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGAGGCTA TTATCGCCGT AGCGAGAGAG ATCAGAGAGA CGATAGCGAG CAACGTCCCA 
AAAGAAGCGG AAATAACGAA GGTAGACTTC GAGGGACCCA AAGTCGCTAT CTACACCAAG 
AGACCGCAGG TCTTCTTGGA GAACGACGGA GAGCTCGTTA AGAGAATAGC GAAAACGATA 
AAGAAGAGGG TCATAGTGCG CGGGGATCCT GAGAGCAGAT TGAACGAAGG TAGCGCCGAA 
GAATTCATAA AAAAAGCTGT CCCCCCGGAG GCTGGTTTAA AGAACGTCTA CTTTAACGAT 
GTTACCGGCG AGGTTGAGCT GGAGGTCTTA TACCCGGAGA AAATACCCCC CGAAGTTCTG 
AACAGGGTTT TCTTCGAGAC TCTCTGGACG CCCAGAGTGT TGAGAAAGCC CCCCGTTCAC 
TCTAGGACTG TAAGCGAGAT AAGGGAGCTG TACAGGGCGT CAAAGCAGGA GAGAATAGAT 
TTCCTGAGAA AGCTTGGATA CAAGGTTTAC CGCAAGCCTA TCTTCCCGGC AGACAGGGTA 
AGAATAGTTT CGCTGGGCGC CTTCCACGAG GTCGGTAGAA GCGCCGTGCT AGTACAGACA 
CCCGAGGCAA ACATTCTGCT CGACGCCGGA TTAAAGCCTA CCGGCAACGG CGACGAACTA 
CCCTTATTCG ATTTACCGGA ATTCGACCTG GAAAGCCTGG ACGCAGTCGT AATTACGCAT 
GCACACCTAG ACCACGTTGG AGCCCTACCT GTTCTCTTCA AGTACGGGTA CAAGGGACCC 
GTCTACATGA CCGAACCTAC GCTTCACTTG TCAAAGCTAC TGTTCGAGGA CTACATAAAG 
GTGGCTCAGA GAGAGGGAAA GAACGAGCTT TACTCAATGC GGGATGTTAA CTCGCTACTC 
CTCAACACGT ATACGCTGTC CTACGGAGAG GTAACAGACA TCGCGCCCGA GATAAGGCTC 
ACCTTTTACC GTGCGGGGCA CATACTCGGG TCGGCCATGG TCCACCTACA CATAGGTGAA 
GGGCTCATCA ACATCGTCTA CACAGGGGAC ATGAAGTACG CTAGGACAAT GCTACTGGAC 
CCGGCCTACA ACAAGTTTCC GAGGGCCGAG GTACTTATAA TAGAATCTAC GTACGGCTCT 
AAATCTGACG TATTGCCGAG TGAAGACGAC GCTAAGCTAG AACTTGCAAA GATAGTGCTG 
GAGACCATAG AGAGAAAAGG GGTCGTCCTC ATACCGGTCC TGGCCGTTGG GCGCGCCCAG 
GAGGTGCTGC TGGCGCTCTT AGACCTCATG AAAAAAGGCG CGGTGCCGCG CGTGCCTATA 
TTCATTGAAG GGATGATAGA CGAGGTCTCA GCCGTACACA TGACGTTCCC GGAGTACCTC 
TCGGCCACTA TAAGAGAAAT GATATACAGA GACGAGAACC CGTTTACCTC CGAGAACATC 
CACGTTATAC GCGGGGAGGC CAGAGAGGAC ATCACAGAGA AAAAGCCCTC AATCATCCTG 
GCGACCTCAG GGATGCTTAC AGGAGGGCCG GTACTGGACT ACCTCAGGAT CCTGGCGGAT 
GACGAGAACA GTAGCCTAGT CTTCGTGAGC TACCAAGTGG AAGGGACTCT GGGAAGGAAG 
ATACTCCAAG GGCTTAGAAA GCTAAGCTTC ACAGACCCCT CCGGTAAAGT CATAAACAAG 
GACTTAAAGA TGAGGGTATA CAGGGTAGAG GGCTTCTCAG GACACAGCGA TAGAAGGCAA 
CTCGAGGCGT TCATAAGGAG AATGGAGCCT AGCCCTCGAA CCGTGATCCT TAACCATGGA 
GAAGCTGGTA AAATAGAAGA GTTTAGAAGG TATCTCTCAA GCGAATGGTT CAAGAAGAAG 
ACAGGGCTTA ACCTCGACGT GCTAACGCCG AAGAACGCCG AGAGCATAAG AATAGTGTAG 

 

Protein sequence

MEAIIAVARE IRETIASNVP KEAEITKVDF EGPKVAIYTK RPQVFLENDG ELVKRIAKTI 
KKRVIVRGDP ESRLNEGSAE EFIKKAVPPE AGLKNVYFND VTGEVELEVL YPEKIPPEVL 
NRVFFETLWT PRVLRKPPVH SRTVSEIREL YRASKQERID FLRKLGYKVY RKPIFPADRV 
RIVSLGAFHE VGRSAVLVQT PEANILLDAG LKPTGNGDEL PLFDLPEFDL ESLDAVVITH 
AHLDHVGALP VLFKYGYKGP VYMTEPTLHL SKLLFEDYIK VAQREGKNEL YSMRDVNSLL 
LNTYTLSYGE VTDIAPEIRL TFYRAGHILG SAMVHLHIGE GLINIVYTGD MKYARTMLLD 
PAYNKFPRAE VLIIESTYGS KSDVLPSEDD AKLELAKIVL ETIERKGVVL IPVLAVGRAQ 
EVLLALLDLM KKGAVPRVPI FIEGMIDEVS AVHMTFPEYL SATIREMIYR DENPFTSENI 
HVIRGEARED ITEKKPSIIL ATSGMLTGGP VLDYLRILAD DENSSLVFVS YQVEGTLGRK 
ILQGLRKLSF TDPSGKVINK DLKMRVYRVE GFSGHSDRRQ LEAFIRRMEP SPRTVILNHG 
EAGKIEEFRR YLSSEWFKKK TGLNLDVLTP KNAESIRIV