Gene Tpen_0258 details

Gene Information

• Locus tag: Tpen_0258
• Symbol: rps4p
• ID: 4601850
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermofilum pendens Hrk 5
• Kingdom: Archaea
• Replicon accession: NC_008698
• Strand: -
• Start bp: 227335
• End bp: 227853
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 639773012
• Product: 30S ribosomal protein S4P
• Protein accession: YP_919671
• Protein GI: 119719176
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01018] ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type)

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGATC CGAAAAAACC TCGTAAAAAG TGGCAGGGAC CGTCCCACCC GTGGCGCAAA 
GAGACTCTAC TAGAGGAAAT GCAGCTCGTC GGAGAGTACG GCTTGAGAAA TAAGAGAGAG 
CTCTGGATAG CAAAGTCTCT TTTAAGGGAG ATACGCGCAA AAGCTAGGAA GCTTTTAGCC 
TTGCCCGCCG AAGAAAGGAT TAAGCTGGAA AAGCCCCTCG TCTCCAGGCT GTATAAAATG 
GGGCTGTTGC CCAGCGAGGA CGCCAGCTTG GACGACGTGT TAAGCCTTAC TGTGCGGGAC 
GTCCTAGAAC GACGCCTTCA GACGATCGTC TACCGTAAGG GTTTAGCCAC GACTATTAGG 
CATGCAAGAC AGCTGATCAC GCACGGACAC ATAGCGGTGA ACTCCAGGCG AGTGAGAAGC 
CCTGGCTACC TCGTGTCTCG AGACGAGGAA AACTTCATTA GTTACTACGA AGGCTCACCA 
CTCGCTAAGA TGGCTCAGGG AGGTGCGCAG AATGTCTGA 

 

Protein sequence

MGDPKKPRKK WQGPSHPWRK ETLLEEMQLV GEYGLRNKRE LWIAKSLLRE IRAKARKLLA 
LPAEERIKLE KPLVSRLYKM GLLPSEDASL DDVLSLTVRD VLERRLQTIV YRKGLATTIR 
HARQLITHGH IAVNSRRVRS PGYLVSRDEE NFISYYEGSP LAKMAQGGAQ NV