| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4800 |
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| Symbol | |
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| ID | 4595398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008697 |
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| Strand | + |
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| Start bp | 118859 |
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| End bp | 124762 |
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| Gene Length | 5904 bp |
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| Protein Length | 1967 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639772587 |
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| Product | DNA primase catalytic core |
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| Protein accession | YP_919247 |
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| Protein GI | 119714105 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type)
[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core
[TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTCC ACAAGCTGAC GGCCGGATCG GGGTACGACT ACCTGACCCG CCAGGTCGCA
GCGATGGACG CCACTGACAA GGGTCACACC GGGCTCGCGA GCTACTACAC CGAGAAGGGC
GAGACCCCCG GCGTGTGGGT CGGATCCGGC ATGGAGGGCA TCGAGGGCCT GGACGCCGGC
GACGTCGTCA CCGCCGATCA CATGCAGAAC CTGTTCGGCG CCGGGCACCA CCCGCTGGCC
ACCGCACGCA CCAAGGAGCT GGATCTGCGG GTCGGGCGCG CCGGCGTCGG GAGCCCGACC
GCGGCCGACT ACAAGGCTGC AGCGCGTCTC GGCACCCCGT TCAAGGTCTA CGAGAACGAC
GTCAGCGCCT TCCGGGTGGA GGTCGCCAAA CGCCTCGCGG CCGTCAACGA GGCCGCTGGG
CTGCCGGGCG ACTGGCCGGT CCCAGCCGAG GAGCGGGCAC GGATCCGCAC CGAGATCGGG
CGTGATTTCT TCCGGGCCGA GCACGGCCGC GAGCCTGCCG ACGCGCGCGA GCTCGCCGCC
ACGATCGCCA AGCACTCCCG GCCCAAGACC AACGCCGTGG CCGGCTACGA CCTCACCTTC
TCGCCGGTGA AGAGCGTCTC CACGCTTTGG GCACTGGCCG ACCCCAAGAC CGCCGCGGTC
ATCGAGGGCG CTCACCAGTC GGCGATCAAG GACGCGCTGA ACTTCATCGA GACCAAGGCG
CTGTTCACCC GCCAGGGCAC AAACGGGATC CGCCAGGTCA ACGTCCGCGG CCTGCTGGCC
ACGGCGTTCA CCCACCGCGA CTCCCGCGCC GGCGACCCGG ATCTGCACAC CCACGTCGCG
GTCGCGAACA AGGTCCAGAC CCTCGACGGA AAGTGGCTGG CGATCGACGG CCGGCTGCTC
TACAAGGCCA AGGTCTCTGC CTCGGAGACC TACAACACCG CGCTCGAGCG GCACCTGGGC
GACGCGCTGG GGGTACGGTT CGCGGAACGG CCGAATCCCG ACGCCCGGAA GCGGCCGGTG
CGCGAGATCG TCGGCGTCGA CCCCGACCTC AACCACCGCT TCTCCAAGCG CCGCGTCAGC
GTCGAAGCCC GCCGCAAGGA GCTGGCCGCC CAGTTCCAGG CGACCCACGG CCGCCCGCCG
ACACCGATCG AGACGCTGCA GCTGGCCCAG CGGGCCACCC TGGAGACCCG CGAGGCCAAG
CACGAGCCCC GCTCGCTCAA CGACCAGCGG GAGGCCTGGG ACCGCGAGGC GGTCGAGGTC
CTCGGCTCAC CGCGAGGCCT CCAGCAGATG CTCCACGGCA CACTCAACCC GACCGCCGCC
GGAACCGCCC CGGTCGCCGA CGCGGCGTGG TTCGCCAAGA CCGGCGACCG GATCGTGACG
ACGATGGAAG GCGGCCGCGC CACCTGGCAG TACTGGCACG TCTATGCCGA GGCCCAACGC
CAGGTGCGGG CCGCCAACGT GCCCACCGAC CAGGTCAGCA CCGTCGTCGG CTTACTGGTC
AGCGAGGTCC TCGACGGCCG CTCGGTCAGC ATCACTCGCC CCTTCGACGA GATCTCCGAA
CCGCCCGAGC TGCGCAAGCT GGACGGCGCC TCGGTCTACA CCGTCGGCGG CGTCCACCTG
TTCACCTCGA GCAAGGTCCT GGCCGCCGAA GAGCGCCTCG TGGAGGCCGC CGGCCGCCGC
GACGGCTACG CGGTCGACGA GCAGAACGTC GCCCTGGCGC TCCTGGAGTC CGAAGCCAAC
GGGGTCACCC TCAACGCCGG CCAAGCCACC TTGGTCAAGG AGATGGCCAC CTCCGGCGCC
CGCCTGCAGC TGGCGATCGC GCCCGCCGGC TCGGGCAAGA CCACCGCGAT GCGGGCGCTC
GCCCAGGCCT GGACCGACGG CGGCGGCAGC GTGATCGGCC TCGCCCCCTC AGCCGCGGCC
GCGGACGCAC TGAGGGTCTC GATGGGCTCC CAGATCGACA CCCAGACCGA CACCCTCGCC
AAACTCACCC ACTCGCTCGA GCAGTCCCAG GTCACCGGCG CCGAGGTGCC TGACTGGGTC
GCCGGCATCG GCCCCCAGAC GCTCGTGGTG ATCGACGAGG CCGGCATGGC CGACACGCTC
TCCCTCGACA TCGCCGTGCA ACACGTCCTC GAGCGCGGCG GCAGCGTCCG CCTGGTCGGC
GACGACCAGC AGCTCGCCGC GATCGGCGCC GGCGGCGTGC TGCGCGACAT CCGCGCCACC
CACGGCGCGC TGCAGCTGAC CGAGCTCGTC CGGTTCACCG ACCCGGCCGA AGGCGCCGCC
TCGCTGGCGC TGCGCGAGGG CAAGGGCGAG GCCCTGGGCT TCTACCTCGA CCGCGACCGG
GTGCACGTGG GCGACCTGGC CACCATGACC GAGGACGTGT TCGCGGCCTG GCAGGCCGAC
CGTGCCGCGG GCCTGGACGC GATCATGCTC GCCCCGACCC GCGAGCTGGT CAGCGAGCTC
AACCAGCAGG CCCGCGCCCA CCGACTCGAG GGGGCCGACC CCGCCAGCGT CGGCCCGGCC
CGGCGCCTGG CCGACGGCAA CGAGGCCAGC ATCGGCGAGC TGATCATCAC CCGCACCAAC
GACCGCAAGC TGCGCACCTC GGCCACCGAC TGGGTCAAGA ACGGCGACCG GTGGACCGTC
CTCGGCCTCC ACGAGGGCGG CGACCTGACC GTGCAGCACA CCCAACACGG CCGCACCGTC
CGCCTCCCCC GCGAGTACGT CGAGACCTCC ACCGAACTCG GCTACGCCTG CACCGTGCAC
ACCGCCCAGG GCGTCACCAC CGACACCATG CACGGCCTGG CCACCGGCAA CGAGTCGCGC
CAGCAGCTCT ACACGATGCT CACCCGAGGC AAGAGCGGCA ACCACATCTA CCTGCAGGTC
GTCGGGGACG GCGACCCACA CTCGGTGATC CACCCGACCC TGGTCCGCCC GCTCACCCCC
ACCGACATCC TCGAGTCGAT GCTGGCCCGC GACGACGCCC AGCGGTCCGC GACCAGCCTC
ATGCGCGAGC AGGCCGACCC CGCCACCCAG CTCGGTGAGG CAGCCCAGCG CTACCTCGAC
AGCCTCTACG TCGCCGCCGA GAACCACCTC CGAAACACCG CCGGACCCGA CGGCTCTAAC
GTGGTGGAGG CCCTGGACAG CACCGTCGAC CAGCTACTTC CCGGCCTGGC CGATGAGGCT
GCCTGGCCCA CGCTGCGCGC CCATCTGCTG CTGCTTGGCG CCGCGGGTGA GAACCCCGTG
GAGGCGATGC GCGCGGCCGC GAGCGACCGA GAACTGGTCT CGGCCGAGGA CCGCGCCGCG
GTGCTCGACT GGCGGCTAGA CGCCTCCGGC ATGCGCAACG TCGGCACCGG CCCACTGCCC
TGGATTCCCG GCGTACCGGA GCGACTGGCC GACGACCCGC ACTGGGGTGC CTACCTCGAC
CAGCGCGCGC ACCTGGTCGA CCAGCTCGCC GACGAGGTCC GCGGCCGGGC CGCGGCACAG
ACGTCGCTGC CGACCTGGGC GCAGAACGGG ATCCGACCCG ACACCGACAC GGTGGCCGAC
GTCGAGGTCT GGCGAGCGGC CATGCAGGTC CCCCTCGACG ACCGTCGCCC GACCGGCGCG
CCGCAGCTAC AGAAAGCCTC CTCCACCTAC CAGCGACGGC TCAACCGGCG CATCACCGGC
GACCACACCC CGGCGCTCAC GGAATGGCGC CAACTGCTCT ACTCGCTGGC CCCGCAGGTC
CGCGGCGACG AGTTCACCCC GCTCCTTGCC GAACGGCTCG CGGCCATGTC GCGCGCCGGC
GTTGAGGCCC ACCAACTGCT CCGCACCGCC ACGGCGGCTG ACACTGGGGC CGGCCCTCTT
CCTGATGAGC ACGCCGCGGC GGCGCTGTGG TGGCGCATGG CACGCCACCT CTCGCCCGCC
GTGGCCGCCC AGGTCGGGGA CGGCTCTCAC GGCGAGGGGG TCACCACCAG CTGGGCAGCG
CAGTTGCCCG AACTGCTCAG CGATGAGCGG TCCGCCCGCA TTCAGGCGAG CGCCTGGTGG
CCCGCGCTGG TCTCCAACAT CGACCACGGA CTGCAGCGCG GCTGGCAGCT CGAAGCCCTG
CTGTCGGCCG GGTCCGCCCT GCCCTCCGAC GACATCGACG AGTGCCAGGC GCTGGTGTGG
CGAACCTCGA TCGCGCTCGA ACCGATCCCC GACGAGCACG AGCACGACGA CCACTTCGAC
GAGCCGCCGG TGGACATGTG GGACGGCGTC GAGCCCGACC CGGCCACGTT GGTCGACCAC
CCCGACGACA CCGAATGGCC GCTCCCGCAC GACCTCGAGG CCGACGGCGA CCACCTGGTC
GACCACCCCG AGCCGGACGA GGCGATCGAC CAGGTCGACG TCGCCCCGGC GGCGGCCGAC
AACGTCGACG AGCAGCAGTT CGTCGAGGGC GACCTGACGC TGGCCGCGTA CATCCGCGAC
CTCGGCGGCA CCCCGCTCGA GCCGACCGCC GCCGATATCC GCCTCATGTA CCAGCGGGCC
GATGAGTGGT ACTCCTTCCC CGTCACGCGC GAACGCATGA TCGAGATCAA CGAGATCACG
CAGACCTTCT TCGAGTCCCG GTTCACCGAC TCATGGGGTC GCGACTACCT CACCGGACGG
TTCGGGATCG ACCTCGCCGG GCACGAGCAC TTCCGTCCCG GACAGGCGCC GGCCGGGTGG
ACCAACCTGG TCGACCACCT GCGCCACCGC GGCGTCAGCG GCGCCGAGAT GTTGGCCACC
GGGGTCGCCA CCACCGCCAG CACCGGCCGA CTGATCGACC GGTTCCGGGA CCGAGTGATG
TTCCCGGTGG TCCACAACGG TGAGGTGCTC GGGTTCGTCG GCCGACGCCG ACCTGAACTC
ACCGACGCCG ACCAAGCGAA CGGCCGGGGC GGCCCGAAGT ACCTGAACAC CGCCGACACC
CCGCTGTTCC ACAAGGGCGC CCAGCTGTAC GGCGTCGTCG ACGAGCTCCT CGCCGAAGGC
GCCGTCCCGG TCATCGTCGA GGGCCCCATG GACGCGATCG CGGTCACGCT GGCCAGCGCC
GCTCGCTACG TCGGCGTGGC CCCGCTCGGC ACGTCACTGA CCGACGAGCA AGCCTCCCAG
CTCGGCGGAA TCGGCCGAGA CCCGATCGTG GCCACCGACG CCGACCTCGC CGGCGAGGTC
GCGGCCGAAC GCGACTTCTG GATGCTCACC CCGCACGGTC TCGACCCCGG CTACGCCCGC
TTCCCCGAGG GCCTGGACCC GGCCGACCTG CTCGCCCAAC GCGGCCCCGC GGCCCTCACT
GCATCGCTGG CCAGCGGCCA GACGCTGGGT GACCAACTGC TCTCCGAGCG GCTCGACAAC
CTCGCGCCCG AGCAGGCCCG CGTGGCCGCG ATGCGAGTCC TTGCCGCCCG GCCCAGCCGC
GCCTGGGCGC CGGGCACCAA CCTGGTGCGC GCCCGACTGA AGCTCTCCCA ACTGCAGTCG
CGGCGGGACC TGCGCGACGC CATCAAGGCG TGGGACGCCG ACCCCCGCAG GGCCGCCCGG
GCCGAGCTGA ACAGCAGCAG CGAGGTCCGC GCCCGCCTTG AGGCCGCGGC CGCGAAGTCG
CCGGCGGAAC GCTGGGCCCC GCTGGCCCGC GAGGTCGACC CGCGCCTGGC GGAGCAGGAC
GACTGGCCCG CCACCGCCGC GATGCTGCAA CAGGCCCACG AGCAAGGCCA CGACGTCAGC
GCCGCTACCC GCGCCCTGGT CGCAGCAGCA CCCCTGGGCG ACGCCCCCGC CCGCGAACTG
CGCTACCGGC TGGTTCGGCA GGTTGGATTC GGCGAACACG ACGCCGAATC CACCGACCGT
GACGCCCCGA AGCGCCGGCG CGACGCGGGT ACTGGACATG AGCTCGGCTC TTCGAACCCA
GTGCACCGCA GCCGCCGCCG GTAG
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| Protein sequence | MSLHKLTAGS GYDYLTRQVA AMDATDKGHT GLASYYTEKG ETPGVWVGSG MEGIEGLDAG
DVVTADHMQN LFGAGHHPLA TARTKELDLR VGRAGVGSPT AADYKAAARL GTPFKVYEND
VSAFRVEVAK RLAAVNEAAG LPGDWPVPAE ERARIRTEIG RDFFRAEHGR EPADARELAA
TIAKHSRPKT NAVAGYDLTF SPVKSVSTLW ALADPKTAAV IEGAHQSAIK DALNFIETKA
LFTRQGTNGI RQVNVRGLLA TAFTHRDSRA GDPDLHTHVA VANKVQTLDG KWLAIDGRLL
YKAKVSASET YNTALERHLG DALGVRFAER PNPDARKRPV REIVGVDPDL NHRFSKRRVS
VEARRKELAA QFQATHGRPP TPIETLQLAQ RATLETREAK HEPRSLNDQR EAWDREAVEV
LGSPRGLQQM LHGTLNPTAA GTAPVADAAW FAKTGDRIVT TMEGGRATWQ YWHVYAEAQR
QVRAANVPTD QVSTVVGLLV SEVLDGRSVS ITRPFDEISE PPELRKLDGA SVYTVGGVHL
FTSSKVLAAE ERLVEAAGRR DGYAVDEQNV ALALLESEAN GVTLNAGQAT LVKEMATSGA
RLQLAIAPAG SGKTTAMRAL AQAWTDGGGS VIGLAPSAAA ADALRVSMGS QIDTQTDTLA
KLTHSLEQSQ VTGAEVPDWV AGIGPQTLVV IDEAGMADTL SLDIAVQHVL ERGGSVRLVG
DDQQLAAIGA GGVLRDIRAT HGALQLTELV RFTDPAEGAA SLALREGKGE ALGFYLDRDR
VHVGDLATMT EDVFAAWQAD RAAGLDAIML APTRELVSEL NQQARAHRLE GADPASVGPA
RRLADGNEAS IGELIITRTN DRKLRTSATD WVKNGDRWTV LGLHEGGDLT VQHTQHGRTV
RLPREYVETS TELGYACTVH TAQGVTTDTM HGLATGNESR QQLYTMLTRG KSGNHIYLQV
VGDGDPHSVI HPTLVRPLTP TDILESMLAR DDAQRSATSL MREQADPATQ LGEAAQRYLD
SLYVAAENHL RNTAGPDGSN VVEALDSTVD QLLPGLADEA AWPTLRAHLL LLGAAGENPV
EAMRAAASDR ELVSAEDRAA VLDWRLDASG MRNVGTGPLP WIPGVPERLA DDPHWGAYLD
QRAHLVDQLA DEVRGRAAAQ TSLPTWAQNG IRPDTDTVAD VEVWRAAMQV PLDDRRPTGA
PQLQKASSTY QRRLNRRITG DHTPALTEWR QLLYSLAPQV RGDEFTPLLA ERLAAMSRAG
VEAHQLLRTA TAADTGAGPL PDEHAAAALW WRMARHLSPA VAAQVGDGSH GEGVTTSWAA
QLPELLSDER SARIQASAWW PALVSNIDHG LQRGWQLEAL LSAGSALPSD DIDECQALVW
RTSIALEPIP DEHEHDDHFD EPPVDMWDGV EPDPATLVDH PDDTEWPLPH DLEADGDHLV
DHPEPDEAID QVDVAPAAAD NVDEQQFVEG DLTLAAYIRD LGGTPLEPTA ADIRLMYQRA
DEWYSFPVTR ERMIEINEIT QTFFESRFTD SWGRDYLTGR FGIDLAGHEH FRPGQAPAGW
TNLVDHLRHR GVSGAEMLAT GVATTASTGR LIDRFRDRVM FPVVHNGEVL GFVGRRRPEL
TDADQANGRG GPKYLNTADT PLFHKGAQLY GVVDELLAEG AVPVIVEGPM DAIAVTLASA
ARYVGVAPLG TSLTDEQASQ LGGIGRDPIV ATDADLAGEV AAERDFWMLT PHGLDPGYAR
FPEGLDPADL LAQRGPAALT ASLASGQTLG DQLLSERLDN LAPEQARVAA MRVLAARPSR
AWAPGTNLVR ARLKLSQLQS RRDLRDAIKA WDADPRRAAR AELNSSSEVR ARLEAAAAKS
PAERWAPLAR EVDPRLAEQD DWPATAAMLQ QAHEQGHDVS AATRALVAAA PLGDAPAREL
RYRLVRQVGF GEHDAESTDR DAPKRRRDAG TGHELGSSNP VHRSRRR
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