| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4706 |
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| Symbol | |
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| ID | 4595216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008697 |
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| Strand | - |
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| Start bp | 3468 |
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| End bp | 4940 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639772495 |
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| Product | Type IV secretory pathway VirD4 components-like protein |
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| Protein accession | YP_919155 |
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| Protein GI | 119714013 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 0.220064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.843758 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACAG CTCTCAAGCA CGTGAAGCCG CAGGAGGTGG GCTGGCGGCT CGGCCAGGCC
GGCCGCAGCG GCCCCGAATT GTGGGTGCCC TTCGACAGGA CGACTTGCGT GATCGGCCCC
CAGGGTTCGG GCAAGACCCT GGACCTGCTG GTGCCCGCTC TGCTGGACGC GCCCGGGGGT
GCGCTGGTGA CCCTGACCAA GCCCGAGGAC CTGTTCCTCA CCCTGGAGGC TCGACAGCGC
GATGGCCGCC CGGTCGCGGT TCTCGATCCG TTCAACGCCG CCCCCGGCAC GCCGGAGCTG
GTGTGGGACC CGATCAAGGG GTGTGAGGAC GCGATGCTCG CCGAGCGGCG GGCGAAGGCG
TTCGCGAACG GCACCATCAA GGGCGCCACC TCTCAGTCCT CCGACCAGGC TGCCCGGTTC
TACGCCGGGG AGTGCGCGAA GGTCCTGCAG GCCTACTTCC ACGCCGCGGC GATCGCCGGC
GTCGGGCTGG AGGAGGTGCT GATGTGGGTC TCCAGCCCGC GCGAGTACCC GCAGGCCGAG
GAGATCCTGC GTACCCACCG GGCCGCGGAG CCCCTGTGGG ACGGTTTGCT GCGCGGCGCC
CTGTACGGCG ACGAGCGGAC CGCCGGCAAC ACGATCACCA CCGTGCAGCA GTCCATGGCG
CTGTTCTTCC AGCGCTCGAT CCGGGAACGC TGCGTCCCGT CCGCGACTCG GCCGGCGACC
GATCTCGAGG CTCTGATCCG GGCGGGCGGC ACGATCTATC TGCTGGGCCG CGACGACCCG
TACGCGAGCG CGTCTCCGCT GATGACTGCT GTCACCGAGC AGATCCTGGA CACGGCCAAG
CGGCTGGGGG AGACCTCCCC GCACGGGCGG CTGTGCCCGC CCTTCCTCGC CTGTCTCGAC
GAGCTGCCGT CGACCGCGCC GATCCCGACG CTGTCGACCC GGATGGCCAA CGAGCGTGCG
CTGGGGCTCT CCTTCATCCT CGCTGCCCAG ACCTGGCGGC AGTTCGTGGT CTGCTACGGC
GAGGACGAGG CCCGCACCAT CTACGGGTTG TCCAACAACC TGGTGGTCTT CGGCGGCGGC
AAGGACATCC GCTTCTACCA GGAGCTCTCC GACCTGATCG GGTCCACCAG CCACACCGAG
ACCCGGTACT CCGCGCGCGG GCACGAGCTG TTCGGCGTGA TGGACCGGTC CTACGACCAG
CGGCGGGTGC CGATCCTCGA GCCGGCCGAG CTGCGCCGCA TCGAGCAGCG CAAGGCCCTG
GTCCTGGCGG AGATGTACGA CCCGATCATC GCGAACCTGC ACCGCTGCAT CGACGGCAAG
CGCGGCAAGG AGCTGCTGGC CGCGCAGGAG CGTGCCCGGC TCGCGGCGCG CCACGGCGAC
GCCGCGGAGC CCATCCACCC GGTGCCGGTC GAGCCCACGT TGCCGACCGA GCCGGTGTCC
CGGACCCGGC AGCGGCTCGG GATGCCGAAG TAG
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| Protein sequence | MTTALKHVKP QEVGWRLGQA GRSGPELWVP FDRTTCVIGP QGSGKTLDLL VPALLDAPGG
ALVTLTKPED LFLTLEARQR DGRPVAVLDP FNAAPGTPEL VWDPIKGCED AMLAERRAKA
FANGTIKGAT SQSSDQAARF YAGECAKVLQ AYFHAAAIAG VGLEEVLMWV SSPREYPQAE
EILRTHRAAE PLWDGLLRGA LYGDERTAGN TITTVQQSMA LFFQRSIRER CVPSATRPAT
DLEALIRAGG TIYLLGRDDP YASASPLMTA VTEQILDTAK RLGETSPHGR LCPPFLACLD
ELPSTAPIPT LSTRMANERA LGLSFILAAQ TWRQFVVCYG EDEARTIYGL SNNLVVFGGG
KDIRFYQELS DLIGSTSHTE TRYSARGHEL FGVMDRSYDQ RRVPILEPAE LRRIEQRKAL
VLAEMYDPII ANLHRCIDGK RGKELLAAQE RARLAARHGD AAEPIHPVPV EPTLPTEPVS
RTRQRLGMPK
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