| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_5021 |
|---|
| Symbol | |
|---|
| ID | 4583582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 532035 |
|---|
| End bp | 532706 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639772324 |
|---|
| Product | 3-oxoacid CoA-transferase, B subunit |
|---|
| Protein accession | YP_918777 |
|---|
| Protein GI | 119387743 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
|---|
| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.446414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGA AGCTTTCCAA CGCCCAGATC GCCTGGCGCG CGGCGCAGGA CATCGCCGAC
GGCGCCTATG TGAACCTGGG CATCGGGTTC CCCGAGATGG TGGCCAAGTT CCAGCCCCCC
GGCCGTCAGG CGGTGTTCCA TACCGAGAAC GGCGTGCTGG GCTTTGGCGA GGCCCCGCCT
GCGGGCGAGG AAGACTGGGA CCTGATCAAT GCCGGCAAGA AGGCGATCAC GCTGAAGCCC
GGCGCGGCCT TCTTTCACCA TGCCGACAGC TTCGCCATGG TGCGCGGCGG CCACCTGGAC
GTGGCGATCC TCGGCGCCTA TCAGGTGGCG CAGAACGGCG ATCTGGCGAA CTGGTCCACC
GGCCCCAAGG GCGTGCCGGC GGTGGGCGGC GCGATGGACC TGGTGCATGG CGCCAAGCGC
GTTGCGGTCA TCACCGACCA TGTCACCAAG GACGGCAAGC CCAAGCTGGT CAAAGCCTGC
ACCCTGCCGC TGACCGGGGT GGGCTGCGTG ACCCGCGTCT ATACCTCGCT GGCGGTGGTG
GACATTCAGG ACGGCCGCTT CGTGCTGCGC GAAAAGCTGC CCTCCCTGTC GCTGGACGAG
TTGCAGGCGC TGACCGGCGC CGAACTGGTG TTGCCCGACC ATATCGCCGA CCTGATCGCA
CCGGAGCTGT GA
|
|---|
| Protein sequence | MTTKLSNAQI AWRAAQDIAD GAYVNLGIGF PEMVAKFQPP GRQAVFHTEN GVLGFGEAPP
AGEEDWDLIN AGKKAITLKP GAAFFHHADS FAMVRGGHLD VAILGAYQVA QNGDLANWST
GPKGVPAVGG AMDLVHGAKR VAVITDHVTK DGKPKLVKAC TLPLTGVGCV TRVYTSLAVV
DIQDGRFVLR EKLPSLSLDE LQALTGAELV LPDHIADLIA PEL
|
|---|
| |