| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_5020 |
|---|
| Symbol | |
|---|
| ID | 4583581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 531289 |
|---|
| End bp | 532038 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639772323 |
|---|
| Product | 3-oxoacid CoA-transferase, A subunit |
|---|
| Protein accession | YP_918776 |
|---|
| Protein GI | 119387742 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.363473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAC GCATTCCCAA TCTGGCCGAA GCGGTCGCCG GCATCCCCGA CGATGCCACG
GTGATGATCG GCGGCTTCGG CGGCTCGGGC GCGCCGATCG AATTGATCCA CGCGCTGATC
GACCGCTATC TGGCCACCGG CAGCCCCGGC AACCTGACCG TCATCAACAA CAATGCCGGC
AACGGCCATG TCGGCATCGC GGCGATGATC GAGCAGGGCA TGGTCCGCAA GATGGTCTGC
TCCTTCCCGC GCTCGGCCGA TCCGCGGGTG TTTACCGACA AGTATCTGGC CGGAGAGATC
GAACTGGAAC TGGTCCCGCA GGGCACGCTG GCCGAGCGCA TCCGCGCCGG CGGCGCCGGC
ATCCCGGCCT TTTATACGCC CACCAGCTAT GGCACCGACC TGGCGAAGGG CAAGCCGGTC
GCCGAATTCG ATGGCCGGCC CTATGTGCAG GAACGCTGGC TCAAGGCCGA TTTCGCGCTG
ATCAAGGCCG AACTGGGCGA CCATTACGGC AACCTGACCT ATCGGATGGC GGCGCGGAAC
TTCTCGCCCT TGATGGCGAT GGCGGCGGCA CGAACCATCG CGCAGGTGAC GCAAGCGGTC
GCGCCGGGCG GCATCGACCC CGAAACCGTC GTGACGCCGG GCATCTTCGT CTCCGGCATC
GTCGAGGTTG CGAACCCGGC GCAGGAAGAG GCGCTGAACC GCGCCGACGC GGCCTATCCC
CCCACCCGTC CCCAGAAGGT GCAGGCATGA
|
|---|
| Protein sequence | MDKRIPNLAE AVAGIPDDAT VMIGGFGGSG APIELIHALI DRYLATGSPG NLTVINNNAG
NGHVGIAAMI EQGMVRKMVC SFPRSADPRV FTDKYLAGEI ELELVPQGTL AERIRAGGAG
IPAFYTPTSY GTDLAKGKPV AEFDGRPYVQ ERWLKADFAL IKAELGDHYG NLTYRMAARN
FSPLMAMAAA RTIAQVTQAV APGGIDPETV VTPGIFVSGI VEVANPAQEE ALNRADAAYP
PTRPQKVQA
|
|---|
| |