Gene Pden_4994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4994 
Symbol 
ID4583555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp505308 
End bp506510 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content67% 
IMG OID639772297 
Productextracellular ligand-binding receptor 
Protein accessionYP_918750 
Protein GI119387716 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.539292 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAGT TTCGTCTCAG CGGGATGGCG GCATGCGCGC TGGCGGCCTG CGCCGCGTTG 
CCGGCAGGCC CGGCGGCGGC CGAGGTTGCC ATCGGCGTGT TCGTGCCCAC GACCGGGGTG
CTGGCGCCCC TGGGCAACGA CATGCGCAAC GGCTTTCTGC TGGCCGCGAA GGGTGCCATC
GTCAAGGGCG AGCCGGTCAG GCTGATCGTC GAGGATACCG GCGGCAATCC CGCCAACGGG
TTGCGCAAGG CGCAGAAGCT GGTGCTGGAG GACAAGGTCT CGCTGCTGCT GGGCGGGGCG
AGCAGCGCGG TCACGCTGGG CATCAACGCC CAGGCGCCGC GGCTGAACGT GCCCATCGTC
ACCACCAACG CCCAGGCGGT GCCGATCACC GGCGAGCAAT GCAGCCGCTT CATGTTCCGC
ACCGTGCCCC ATGACGGCAA TACCGCCAAG GCCAGCGCGG CGATGTTCGC CGAGCGTCCC
GACATGATCG GACGGAAATG GTTCGTGGTC TATCACGACT ATGCCTATGG CCTGTCCAAC
AAGGCGGAGT TTTCGCATAT ACCCGGCATC CAGATCGCCG GAGAGGCCGG CCGCCCGGTG
GGCACGGCGG ACTGGTCCAG CGCCATCGCG CAGATCCAGG CCAGCGATGC CGACGGCATC
TACCTGGCGC TGGCGGTGGG CGACGACCTG ACCGCCTTTG TCAACCAGGC GCGCGGCTAT
GGGCTGGACT TTCCGATCAT GACCCCGGCG GGCATCCCCG ACACGATGCT GCAGGCGCTT
GGCAAGAACG GCGTGGGCAT GATCGCCAAC GGGCTGACCG CCTCGTGGAT GCAGGAGGAT
GAGAGCCCGC AGATCGCGGA GCTGGTCAAG GCCTATCACG AGGAATACGG CATCGTGCCG
GGCTATCAGG CCATCCAGGC CTATGCGGGG ATGCAGTTCG TGCTGGCCGT GCTGGAGGCG
GCGGACGAGA TCTCGACCGA TGCGATCATC AAGGCACTCG AAGACACTGT CGCCGAAACC
GTGGTGGGTC CCATCGATAT CCGCGCCGAG GATCACCAGG GGATGCAAGG CACCTTCGTC
GCCGAGGCGG TCGCCCTGGA CCCGCCGCGG CACGGCGCAT CCATCGGCTG GAAACCCGTC
ACACGGATGA GCTGGGACCA GATCAACCTG CTTCCCGAGG AAACCGGGTG CAAGGGTTTC
TGA
 
Protein sequence
MGKFRLSGMA ACALAACAAL PAGPAAAEVA IGVFVPTTGV LAPLGNDMRN GFLLAAKGAI 
VKGEPVRLIV EDTGGNPANG LRKAQKLVLE DKVSLLLGGA SSAVTLGINA QAPRLNVPIV
TTNAQAVPIT GEQCSRFMFR TVPHDGNTAK ASAAMFAERP DMIGRKWFVV YHDYAYGLSN
KAEFSHIPGI QIAGEAGRPV GTADWSSAIA QIQASDADGI YLALAVGDDL TAFVNQARGY
GLDFPIMTPA GIPDTMLQAL GKNGVGMIAN GLTASWMQED ESPQIAELVK AYHEEYGIVP
GYQAIQAYAG MQFVLAVLEA ADEISTDAII KALEDTVAET VVGPIDIRAE DHQGMQGTFV
AEAVALDPPR HGASIGWKPV TRMSWDQINL LPEETGCKGF