| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4769 |
|---|
| Symbol | |
|---|
| ID | 4583272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 267038 |
|---|
| End bp | 268522 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639772073 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_918526 |
|---|
| Protein GI | 119387492 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.132101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGC TGGCACTCGA CAACGTCTCG AAAAGCTTCG GCCCGATCGA GGTGCTGCAT
GGCGTCGATC TGGCGCTGGA GCCGGGAGAG GTCCATGCCC TGATCGGCGA GAACGGCGCC
GGAAAATCCA CGATCATGAA GATCCTGGGC GGGTTCCTGG ACCCGACATC GGGCCAGATC
CTGCTGGACG GCGAGCCCGT CCATTTCGCC AGCGGGCCCG AGGCCGAGGC GCAGGGCATC
GTCGTCATCC ACCAGGAATT CAACCTCGCC TCAGACCTGA CGGTGGCGGC GAATGTGTTC
CTGGGTCGCG AGATCGGCGG CTGGCGGCTG GACCATGCCG CCATGCGGGA CGCGACCGCC
GCGCTGCTCA AGCGGCTGGA CACGCGCATC GACCCGGACG CGCGCATCCG CGACCTGTCC
GTGCCCGACC GCCAGATGGT CGAGATCGCC AAGGCCCTGT CGCGCAAGGC GCGGGTTCTG
ATCATGGACG AACCCAGCGC CGTGCTGACC CATCGCGAGG TCGGCGCGCT TTACGCCCAG
ATCGACCGGC TGCGGGCCGA GGGGGTGGCG ATCCTCTACT GCTCGCACCG GCTGGATGAG
GTGGCGTATC TGGCCGACCG CATCACCGTC CTGCGCGACG GCCGCGTCGT GCGCCAGGCG
CTGCGCGGCG AGTTGACCGA GGACGGCATG GCGACCGCCA TGGTCGGCCG CGAGTTGCAG
GATTTCTATC CGCCCAAGGG CCAGCCGGGC GACCAGCCGG CGCTGGAGGT CCGGGGCCTG
ACCGTGCCCA GCCGGGTCCG CGACGTCAGC TTTACCCTGC GCCGGGGCGA GGTGCTGGGC
ATCGCCGGCC TTGTCGGCTC GGGTCGCACC GAACTGGCCG AGGGGCTGGT CGGGTTGCGC
CCCTCGACCG GCAATATCCG GGTCGAGGGG CGCGAGGTCG CCATCCGCAG CCTGCGCGAC
GCCTTTGCCG CCGGCCTCGC CTATCTGACC GAGGACCGCA AGGAGGCCGG GCTGCTGCTC
GACAAGGGCC TGCGCGAGAA CCTGACATTG GCGACGCTGG AACGCTTTGG CGGCTGGCGG
CTGGACACCC GCGCCGAGGA TGCGGCGCTG GAACGCGCCA CGCGGGAATT CGACATCCGC
GCCCCGCGCC GCGACATGCC GGCAGGAAAG CTGTCGGGCG GAAACCAGCA GAAATTGTTG
TTGGCCAAGG TGATGCTTCC TGATCCTGGA ATCATTCTCA TCGACGAGCC GACGCGCGGC
ATCGACGTGG GCACCAAGCG GCAGATCTAT GCCTTCATCC GCAAGCTTGC CGCCGAGGGC
CGCAGCCTGA TCGTCATCAG CAGCGAGATG ACCGAGGTGA TCGGCCTTGC CGACCGCGTG
CTGGTGATGC GCGAGGGGCG GCTGGCCGGC GAACTGGCCG GCGCAGACAT GACCGAGGAC
AGCATCGTCC GCCTTGCCAT GGGCGTGACC GGAGAAGCCG CATGA
|
|---|
| Protein sequence | MTVLALDNVS KSFGPIEVLH GVDLALEPGE VHALIGENGA GKSTIMKILG GFLDPTSGQI
LLDGEPVHFA SGPEAEAQGI VVIHQEFNLA SDLTVAANVF LGREIGGWRL DHAAMRDATA
ALLKRLDTRI DPDARIRDLS VPDRQMVEIA KALSRKARVL IMDEPSAVLT HREVGALYAQ
IDRLRAEGVA ILYCSHRLDE VAYLADRITV LRDGRVVRQA LRGELTEDGM ATAMVGRELQ
DFYPPKGQPG DQPALEVRGL TVPSRVRDVS FTLRRGEVLG IAGLVGSGRT ELAEGLVGLR
PSTGNIRVEG REVAIRSLRD AFAAGLAYLT EDRKEAGLLL DKGLRENLTL ATLERFGGWR
LDTRAEDAAL ERATREFDIR APRRDMPAGK LSGGNQQKLL LAKVMLPDPG IILIDEPTRG
IDVGTKRQIY AFIRKLAAEG RSLIVISSEM TEVIGLADRV LVMREGRLAG ELAGADMTED
SIVRLAMGVT GEAA
|
|---|
| |