Gene Pden_4562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4562 
Symbol 
ID4583301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008688 
Strand
Start bp46125 
End bp46862 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content69% 
IMG OID639771868 
Producthemolysin-type calcium-binding region 
Protein accessionYP_918321 
Protein GI119387287 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.478129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAGAA TCCGTGGCAA TGACGACGAC AACCGCCTGG TCGGCACCAA GTTCGCCGAC 
CAGATCTGGG GCCGCTCGGG CGACGACCTG CTCTTTGGCC GCGCGGGCAA CGATACGCTG
GACGGCGGCG AGGGCAATGA CCGCATCGAC GCCGGCTCGG GCCACAACCG CATCATCGGC
GGCTCGGGCA ATGACGTGAT CAAGGCGCTG GGCGGCAACG ACCGGATCAC GGCGGGCGAG
GGTAACGATG TCGTGCAAGC CGGGGGCGGC AACAACACGA TCTCGCTCGG CTCGGGCAAC
GACCGCTCGG TCAGCGGCGG CGGCCGCGAC ACCATCAGCG GCGGCGAGGG CAACGACACC
ATCCGCGCCG GAGGCGGCAA CGACCTGATC CGCGGCGGCG AGGGCGACGA CCGCCTGTTC
GGCGAGGCAG GCCACGACCG CATCATCGCG GGCGAGGGCA ACGACACCCT GAACGGCGGC
CGGGGCAACG ACACGATGAC CGGCGGCGAG GGTGCCGACG TCTTCGTCTG GAACGGCGGG
CGCGACCGGA TCACCGATTT CGACCATGAC GACGACGTGA TCGACCTGTC CTTCTATGGC
CGCTTCGACA GTTGGGCCGA CATCCGCGGC GCCGCCAGCC AGGTCGGCGA CAATGTCGTC
ATCAGGGCGG GCGCCGACCG GCTGGTGATC GAGGACACGC GCCTCGGCCA GCTTCGCAGC
GACGATTTCG ACTGGTAG
 
Protein sequence
MARIRGNDDD NRLVGTKFAD QIWGRSGDDL LFGRAGNDTL DGGEGNDRID AGSGHNRIIG 
GSGNDVIKAL GGNDRITAGE GNDVVQAGGG NNTISLGSGN DRSVSGGGRD TISGGEGNDT
IRAGGGNDLI RGGEGDDRLF GEAGHDRIIA GEGNDTLNGG RGNDTMTGGE GADVFVWNGG
RDRITDFDHD DDVIDLSFYG RFDSWADIRG AASQVGDNVV IRAGADRLVI EDTRLGQLRS
DDFDW