| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4550 |
|---|
| Symbol | |
|---|
| ID | 4583289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | + |
|---|
| Start bp | 31432 |
|---|
| End bp | 33387 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639771856 |
|---|
| Product | acetate--CoA ligase |
|---|
| Protein accession | YP_918309 |
|---|
| Protein GI | 119387275 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02188] acetate--CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTG AAACTTCTGG GAAACATCCG ATTCCGCCGG GTTTTGGGGA TGCCCTGGTC
CAGCCTGGCG ATTACGCCCG CATGTATGCC GAATCGATCT CGGACCCTGA CGGGTTCTGG
GGCCGCGAGG GCAGGCGGCT GGACTGGATC CACCCCTATT CCAGGGTGAA GAACACCGAT
TTCGCCATGG GCCAGGTCTC GGTGAAGTGG TTCGAGGACG GCATCCTGAA CGCCTCGGTC
AACTGCATCG ACCGCCACCT GCCCGGGCGC GCGAACCAGG CCGCGATCAT CTTCGAGCCG
GACGACCCGG ACCAGCCGGC GCGCCACATC ACCTATGCGG AACTGTCGGA AAAGGTGAAC
CGCTTCGCCA ACGTGCTGCT GAGCCAGGGG GTGATGCGCG GCGACCGGGT GGTGATCTAC
CTGCCGATGA TCCCCGAGGC GGCCTATGCC ATGCTGGCCT GCGCGCGGAT CGGCGCCATC
CACTCCATCG TCTTCGCCGG CTTCTCGCCC GACGCGCTGG CCAACCGCAT CAACGACAGC
GGCGCCAAGC TGGTGATCAC CGCCGACACC GCGCCGCGCG GCGGCCGCAA GACGGCGCTG
AAGTCGAATA CCGACGCGGC GCTGCTGCAT TGCTCGGACC GGGTGCGCTG CCTGGTGGTC
AGGCATACCG GCGACCAGAC CAGCTGGATC GACGGGCGCG ACGTGGACGT GCTGGCGATG
ATGGAGCAGG TCAGCCCGGA TTGCCCGCCG CGGCCGATGA ATGCCGAGGA CCCGCTGTTC
ATCCTCTATA CCTCGGGCTC GACGGGCAAG CCCAAGGGCG TGGTGCATTC GACCGCCGGC
TACCTGCTTT ATGCCGCGAT GACGCATCAA TACGTCTTCG ACTACAAGGA CGGCGACATC
TTCTGGTGCA CGGCCGACGT GGGGTGGGTG ACGGGGCACA GCTATATCGT CTACGGCCCG
CTGGCCAACG GCGCCACGAC GCTGATGTTC GAGGGCGTGC CGACCTGGCC GGATGCCGGC
CGCTTCTGGG CGGTCTGCGA AAAGCACGGG GTCAACCAGT TCTACACCGC GCCGACCGCC
ATCCGGGCGC TGATGGGGCA GGGGCCGGAA TGGGTCGAGA AGCACGACCT GTCCAGCCTG
CGGGTGCTGG GCACGGTGGG CGAGCCGATC AACCCCGAGG CCTGGGTCTG GTACGACCGG
CATGTGGGCA AGGGGCGCTG CCCGATCGTC GACACCTGGT GGCAGACCGA GACCGGGGGT
CACATGATCA CCTCGCTGCC CGGCGCGATC GAGGCCAAGC CGGGCTCGGC GACGCTGCCC
TTCTTCGGGG TCAGGCCGGT GGTTCTGGAT GCCTCGAGCG GGGCGGTGCA GGAGGGCGAC
GGGGTCGAGG GGGTGCTGTG CATCGCCGAC AGCTGGCCGG GGCAGATGCG CACGGTCTGG
GGCGACCACC AGCGCTTCAT GGAGACCTAT TTCCAGCAAT ATCCGGGCTA TTACTTCACC
GGCGACGGCT GCCGGCGGGA CGAGGACGGC TATTACTGGA TCACCGGGCG GGTGGACGAC
GTGATCAACG TCTCGGGCCA CCGGATGGGC ACGGCCGAGG TGGAATCGGC GCTGGTGGCG
CATGAGAAGG TGGCCGAGGC GGCGGTGGTG GGCTATCCGC ACCCGCTGAA GGGCCAGGGC
ATCTATGCCT ATGTGACGCT GATGAACGGG GTCGAGCCCA GCGACGAGCT GCGCGCCGAC
CTTGAGAAAT GGGTGCGCAC CGAGATCGGC CCGATCGCCA AGCCCGACCT GATCCAATGG
GCGCCGGGCC TGCCCAAGAC CCGTTCGGGC AAGATCATGC GCCGCATCCT GCGCAAGATC
GCCGAGGACG ATTTCGGCGC CCTCGGAGAC ATCTCCACGC TCGCAGACCC GGGCGTCGTG
GACCAACTCA TCGAAAACAG AATGAACCGC GCCTGA
|
|---|
| Protein sequence | MTIETSGKHP IPPGFGDALV QPGDYARMYA ESISDPDGFW GREGRRLDWI HPYSRVKNTD
FAMGQVSVKW FEDGILNASV NCIDRHLPGR ANQAAIIFEP DDPDQPARHI TYAELSEKVN
RFANVLLSQG VMRGDRVVIY LPMIPEAAYA MLACARIGAI HSIVFAGFSP DALANRINDS
GAKLVITADT APRGGRKTAL KSNTDAALLH CSDRVRCLVV RHTGDQTSWI DGRDVDVLAM
MEQVSPDCPP RPMNAEDPLF ILYTSGSTGK PKGVVHSTAG YLLYAAMTHQ YVFDYKDGDI
FWCTADVGWV TGHSYIVYGP LANGATTLMF EGVPTWPDAG RFWAVCEKHG VNQFYTAPTA
IRALMGQGPE WVEKHDLSSL RVLGTVGEPI NPEAWVWYDR HVGKGRCPIV DTWWQTETGG
HMITSLPGAI EAKPGSATLP FFGVRPVVLD ASSGAVQEGD GVEGVLCIAD SWPGQMRTVW
GDHQRFMETY FQQYPGYYFT GDGCRRDEDG YYWITGRVDD VINVSGHRMG TAEVESALVA
HEKVAEAAVV GYPHPLKGQG IYAYVTLMNG VEPSDELRAD LEKWVRTEIG PIAKPDLIQW
APGLPKTRSG KIMRRILRKI AEDDFGALGD ISTLADPGVV DQLIENRMNR A
|
|---|
| |