| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4214 |
|---|
| Symbol | |
|---|
| ID | 4582764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1376134 |
|---|
| End bp | 1377048 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639771521 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_917974 |
|---|
| Protein GI | 119386919 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0151609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT CCCGCCGTCG CTTTCTGACC ATCACCGCCG CCGTCGCGCT GCTGCCCGCG
GGGCTGCGCG CCCAGCCCGG CAGGCATTGG GTCGGGCAGG CGCTTGGCGC CCGCGCCTCG
ATCCGCATCG ACCACCCCGA GGCCGGGGCG ATCACCGCCC GCTGCCTGGC CGAGATCGAC
CGGCTGGAAA ACATCCTCAG CCTCTATCGC CCCGGCAGCG CGCTTGCGCG CCTGAACCGC
GACGGCGTGC TGGATGCGCC GCCCTTTGAA TTGCTCGACT GCCTGTCGCT GGCCGGCGCC
GTGCATCGCG CCAGCGGTGG GCTGTTCGAC CCGACCGTGC AGCCGCTCTG GTCGCTCTGG
GCCGAGGCCG CCGTGAATGG CCGCCGTCCC ACGCCCGAGG AGCGGCGCGA TGCGCTGGCA
CGGACGGGCT GGGATCGGGT GCGGCTGGAC GCGGCGCGCA TCACGCTGGA GCCGGGGATG
GCCCTGACGC TGAACGGCAT CGGGCAGGGC TATGTCGCCG ACCGTGTCGC CGCGCTGCTT
GAGGCCGAGG GGCTGGGCGA CATTCTGATC GATACCGGCG AATTGCGGGC CCTGGGCGGC
CGGCCCGATG GGCGCGACTG GCCGGTCCGG CTGGCCGAGG GCGGCGCGGT GGGCCTGCGC
GCCCGGGCGC TGGCGACGTC CGCGCCGCTG GGCACCAGCT TCGACGAGGC GGGCCGCGAC
GGCCATATCC TCGACCCGCT GAGCGGTGCG CCGGCCCGCC CGGTCTGGCG CGCGGTCAGC
ATCTCGGCCC CCGGCGCGGG TCTGGCCGAT GCGCTGTCCA CGGCGGCCTG CCTGACCGCG
GACCTGCAGG AGATCCGTGC GCTGCTGGAC AGGTTCGACG GCACCCGGCT GGAAGCCGCG
CAGCGCCAGG CATAG
|
|---|
| Protein sequence | MSLSRRRFLT ITAAVALLPA GLRAQPGRHW VGQALGARAS IRIDHPEAGA ITARCLAEID
RLENILSLYR PGSALARLNR DGVLDAPPFE LLDCLSLAGA VHRASGGLFD PTVQPLWSLW
AEAAVNGRRP TPEERRDALA RTGWDRVRLD AARITLEPGM ALTLNGIGQG YVADRVAALL
EAEGLGDILI DTGELRALGG RPDGRDWPVR LAEGGAVGLR ARALATSAPL GTSFDEAGRD
GHILDPLSGA PARPVWRAVS ISAPGAGLAD ALSTAACLTA DLQEIRALLD RFDGTRLEAA
QRQA
|
|---|
| |