| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4083 |
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| Symbol | |
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| ID | 4582634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | - |
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| Start bp | 1238878 |
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| End bp | 1241175 |
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| Gene Length | 2298 bp |
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| Protein Length | 765 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639771392 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_917845 |
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| Protein GI | 119386790 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.316882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.489697 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGAG ATGACGAGGA TCGGGCGGTT CCGGCAGCAG AGGGGGCGCC GCCGCCCTCG
GCCTTGCCGC CCGTCTCCGG CCTGGACGTC AAGGCGGCCG AGGCCGAGCA TGCCCGGCTG
AGCGAGGAGG TGGCGCAGGC GAACCTGGCC TATTACCAGG AAGATGCGCC CTTCATCAGC
GATGCGGAAT ACGACGCCAG CAAGCGCCGG CTCGAGGAGA TCGAGGCGCG GTTTCCCGAC
CTTGCCCATT CCGGCAGCCC GACGGCGCAG GTCGGCGCTG CGCCCGACAC GCGCTTTGCC
AAGGTGCCGC ATCGCCTGCC GATGCTGTCG CTGGAAAACG GCTTTTCCCA GGGCGATGTC
GAAGCCTTCG TTCAGCGGGT GCGCTCATTC CTGAACCTCG CATCCGGTGC GCCGCTGGAG
GTCACGGCCG AGCCGAAGAT CGACGGGCTG TCGCTGTCCT TGCGCTATGA AGGCGGGCGG
CTGGTCCAGG CCGCGACCCG GGGCGATGGC GCGGTGGGCG AGAACGTGAC CGCCAATGCC
CGCACCATCG CCGATATTCC CGGGCAACTT TCCGGCGACG GCTATCCCGA GGTGCTGGAG
ATTCGCGGCG AATGCTACAT GTCGCACGAG GATTTCGAAA AGCTGAACCA ATCCGAGACC
GGCCGCGTCT TCGCCAATCC GCGCAACGCG GCGGCGGGTT CCCTGCGCCA GCTCGATCCG
TCGGTGACGG CGGCGCGGCC ACTGCGCTTC TTCGCTTATG CCTGGGGCGA GGTCAGCGCG
TCCTTCGCCG GCACGCAGAT GGAGGCGGTG CGGCGGATGC AGGCATTCGG CTTCCAGACC
AATCCGTTGA CGCGGATCTG CGCCTCGGTG TCCGAGATGC TGTCGGCATG GGCCGAGATC
GAGCAGATGC GCGCCACGCT GGGCTATGAC ATCGACGGCG TCGTCTACAA GGTCAACGAC
CTGGCCTATC AGGCGCGGCT GGGCATGCGC TCGACCACGC CGCGATGGGC GCTTGCGCAT
AAATTCCCGG CCGAGCGCGC CTGGACCCGG CTGGAAGCCA TCGATATCCA GGTCGGCCGC
ACCGGCGCGC TGAGCCCGGT GGCGCGGCTG CATCCGGTGA CGGTGGGCGG TGTGGTCGTC
TCGAACGCCA CCTTGCACAA CGAGGATTAC ATCGCCGGCC GCGGCGCCGA TGGCAGCGAG
ATCCGCGGCG GCAAGGATAT CCGCATCGGC GACTGGGTCG AGGTCTATCG CGCCGGCGAC
GTGATCCCCA AGGTCGCCGA TGTCGACCTG GCCAAGCGCC CCTCCGAAGC CGAGCCCTAT
GCCTTCCCGA CCACCTGCCC GGAATGCGGC TCTCCCGCCA TTCGGGAAGA GGGCGATTCG
GTCCGCCGCT GCACCGGCGG GCTGATCTGC CCGGCGCAGG CGGTCGAGAA GCTGCGCCAT
TTCGTCTCGC GCGCCGCCTT CGACATCGAG GGGCTGGGCG CCAAGCTGGT CGAGGAACTG
TTCCGCGACG GCTGGATCGC CGAACCCGCC GACATCTTCA CCTTGCAGGA CCGTTACGGC
CCCGGCCAAC TGACGCAGTT GAAGAACCGC GAGGGCTGGG GCGAGAAAAG TGCCGCAAGC
CTGTTCCAGG CCATCGAGAA GCGCCGAGAG ATCCCGCTGG CGCGGCTGCT TTTCGCGCTT
GGCATCCGCC ATGTCGGCGA GGTTGCCGCC CAGGATCTTG CCCGCCATTA CGGCAGCTGG
GAGGCGCTGG AGATCGCGCT CGACACCGCT CGCCCGGCGG CGCTGGCGCA TCGGGTTGCC
GAGGATGCCG CGCTGGCCGA GCGCGAGGCC GCCCGGGCCG AGGGGCGCCG CGCCCGTCCC
TCGGAGGCCC GCGCCGCAGC CTTGGCGCAG GTCGATCTGT CGCCCGAGGC CACCGCTGCC
TGGACGGGCC TGATCGCCGC CGACGGCATC GGCCCGGTGC TGGCCATGTC GCTGTCGGAC
GCCTTTGCCA ATGAGCGCGA GCGGGCGGCG ATCGACCGGC TGGTGTCCTT TCTGACCGTG
CTGCCGCCCG AAGCGCGCGC CACCGACAGC GCCATTGCCG GCAAGACGCT GGTCTTTACC
GGCACGCTGG AAAAGATGAC CCGGGCCGAG GCCAAGGCAC GGGCCGAGGC GCTTGGCGCA
CATGTCGCGG GCTCGGTCTC GGCCAAGACC GATCTGCTGA TCGCCGGGCC GGGGGCCGGG
TCGAAGGCGA AGAAGGCTGC CGAACTCGGC ATCAAGGTCA TCGACGAGGA CGAATGGCTG
GCGATCGCCC AGGGGTGA
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| Protein sequence | MAGDDEDRAV PAAEGAPPPS ALPPVSGLDV KAAEAEHARL SEEVAQANLA YYQEDAPFIS
DAEYDASKRR LEEIEARFPD LAHSGSPTAQ VGAAPDTRFA KVPHRLPMLS LENGFSQGDV
EAFVQRVRSF LNLASGAPLE VTAEPKIDGL SLSLRYEGGR LVQAATRGDG AVGENVTANA
RTIADIPGQL SGDGYPEVLE IRGECYMSHE DFEKLNQSET GRVFANPRNA AAGSLRQLDP
SVTAARPLRF FAYAWGEVSA SFAGTQMEAV RRMQAFGFQT NPLTRICASV SEMLSAWAEI
EQMRATLGYD IDGVVYKVND LAYQARLGMR STTPRWALAH KFPAERAWTR LEAIDIQVGR
TGALSPVARL HPVTVGGVVV SNATLHNEDY IAGRGADGSE IRGGKDIRIG DWVEVYRAGD
VIPKVADVDL AKRPSEAEPY AFPTTCPECG SPAIREEGDS VRRCTGGLIC PAQAVEKLRH
FVSRAAFDIE GLGAKLVEEL FRDGWIAEPA DIFTLQDRYG PGQLTQLKNR EGWGEKSAAS
LFQAIEKRRE IPLARLLFAL GIRHVGEVAA QDLARHYGSW EALEIALDTA RPAALAHRVA
EDAALAEREA ARAEGRRARP SEARAAALAQ VDLSPEATAA WTGLIAADGI GPVLAMSLSD
AFANERERAA IDRLVSFLTV LPPEARATDS AIAGKTLVFT GTLEKMTRAE AKARAEALGA
HVAGSVSAKT DLLIAGPGAG SKAKKAAELG IKVIDEDEWL AIAQG
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