| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3954 |
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| Symbol | |
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| ID | 4582505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 1089460 |
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| End bp | 1090173 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639771263 |
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| Product | rhomboid family protein |
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| Protein accession | YP_917716 |
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| Protein GI | 119386661 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0843422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCCCG GTTACGATGA ATCGCCGCTG AACCCCGTGC CCGCCGTGGT CTGGATGATC
GCGCTGCCGA TGATCGCCTG CGAGGCGGTG TTCGGCCTTG CCCAGATGGG CTTTATCGGT
GGGGGCGGGC AGGGCGCCGG CCTCGCCATG CGCCAGATCG CGGTCGAGCG CACCGCCTAT
ATCCCCGAAT TCGTGCTGCG GCTGTGGCAG ATGCGGACCT TTCTGTTCGA CCAGAGCTGG
CGCATTGTCA CCTATCCCTT CGTGCACCTG TCGCTGACCC ATGCACTTTT CGTGATCGTC
TTCACGCTGG CGCTGGGGAA CTTGATCGCG CATCAGTTCC GCGCCTGGGC GGTCGCCGCG
CTGTTCTTCG GCTCGGCCAT CGGCGGCGCG CTGGTCTATA CGCTGGCCGC CGGGCTCTTG
CCGCAATTCC GCTTTCAGGC GCTGATCGGC GGCTATCCGG CGGTCTACGG CTTCGTCGGC
GCCTTTACCT TCCTGCTCTG GACCCGGCTC GGACAGGAGA ACGCGAACCG GCTGCGCGCC
TTTGTCCTGA TCGGCATGCT GCTGGCTTTC CAATTGGTCT TCGCCATCCT GTTCCAGGAC
GGCAGCCTGA CCTGGATCGC CGAGATCGCC GGATTCTGCT GCGGCTTCCT TTTGTCCTTC
GTGCTGATCC CGGGCGGGGT CGGGCGCGTG ATGCGCCAGA TCCGTCAGCG CTGA
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| Protein sequence | MRPGYDESPL NPVPAVVWMI ALPMIACEAV FGLAQMGFIG GGGQGAGLAM RQIAVERTAY
IPEFVLRLWQ MRTFLFDQSW RIVTYPFVHL SLTHALFVIV FTLALGNLIA HQFRAWAVAA
LFFGSAIGGA LVYTLAAGLL PQFRFQALIG GYPAVYGFVG AFTFLLWTRL GQENANRLRA
FVLIGMLLAF QLVFAILFQD GSLTWIAEIA GFCCGFLLSF VLIPGGVGRV MRQIRQR
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