Gene Pden_3915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3915 
Symbol 
ID4582466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1049608 
End bp1049958 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content66% 
IMG OID639771224 
Producttransthyretin 
Protein accessionYP_917677 
Protein GI119386622 
COG category[R] General function prediction only 
COG ID[COG2351] Transthyretin-like protein 
TIGRFAM ID[TIGR02962] hydroxyisourate hydrolase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.471177 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGGTT ATCTCACCAC CCATGTGCTC GACACCGCCA ATGGCACGCC CGCGCAGGGC 
ATGCGGATCG AGCTCTACCG CCTCGACCCC GAACGCCGGC TGATCGCCGA GACCGTCACC
AACCACGACG GCCGCACCGA CAGCCACATC CTGCCCGAGG CCGCGTTCCA GACCGGCGAA
TACGAGCTCG TCTTCCATGT CGGCGCATGG CTGGACGCCC AGGGACACCA GGCCGCGAAG
CCCCGCTTTC TCGACCAGGT GCCCTTGCGC TTCGGCATGT CGGAACAGGA CCATTACCAT
GTGCCGCTGC TGATCTCGCC CTACGGCTTC TCGACCTATC GCGGCAGCTG A
 
Protein sequence
MPGYLTTHVL DTANGTPAQG MRIELYRLDP ERRLIAETVT NHDGRTDSHI LPEAAFQTGE 
YELVFHVGAW LDAQGHQAAK PRFLDQVPLR FGMSEQDHYH VPLLISPYGF STYRGS