| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3197 |
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| Symbol | |
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| ID | 4581761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 360637 |
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| End bp | 363270 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639770521 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_916974 |
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| Protein GI | 119385919 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.468072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACC TCGCCGAATA CCGCGGCAGC GCCTCCCGCC TCGCCGATTT CCTGCCCTGG
GCGGCACTGG TCACGCCGGG CGTGGTGCTG AACAAGGACG GTTCGTTCCA GCGCACCGCC
CGGTTTCGCG GCCCCGATCT TGACAGCGCC GTGGCTGCGG AACTGGTGGC GGTCGCCGGG
CGGCTCAACA ACGCCTTTCG CCGCCTCGGC TCCGGCTGGG CCATCTTCGT CGAGGCGCAA
AGATCCGAGG CCGCGACCTA TCCGGACAGC ACCTTCCCCG ATGCCGCCTC GGCGCTGGTC
GATGCCGAGC GCAAGGCCGA TTTCGAGCAG GCGGGCAGCC ATTTCGTCTC CGACTATTTC
CTCACCCTGC TCTGGCTGCC CCCTGCCGAG GAAGCCGCCC GCGCCGAAAG CTGGCTCTAC
GAGGGCCGCG AGACGTCCGG GGTAAACCCA TGGGAGCTGC TGCGCGGCTT CACCGACCGC
GGCGACCGGG TGCTGGCGCT GCTCGACGGC TTCATGCCGG AATGTGCCTG GCTCGACGAT
GGCGAGACCC TGACCTACCT GCATTCGACG ATCTCCACCA ACCGGCAGCG CGTGCGCGTG
CCCGAGGTGC CGATGCATCT TGATGCCCTG CTCGCCGATC AGCCGCTGAC CGGCGGGCTG
GAGCCGCGCC TCGGCGATGC GCATCTGCGG GTGCTGACCA TCACCGGCTT TCCCACCGCA
ACCACGCCCG GCATTCTCGA CGAGTTGAAC CGCATCGCCT TTCCCTATCG CTGGTCGACG
CGCGCCATCC TGATCGACAA ACCCGATGCG ACCCGGCTGC TGACCCGGAT CCGCCGGCAA
TGGTTCGCCA AGCGCAAGTC CATCGCCGCG ATCCTCAAGG AGGTGATGAC CAGCGAGCCC
TCGGCGCTGG TCGACACCGA CGCCGCGAAC AAGGCCGCCG ACGCCGATCT GGCGCTGCAG
GAACTCGGCG CCGATGTTGC CGGGATGGCC TATGTCACCG CCACGGTCAC CGTCTGGGAT
GCCGACCCGC GCCTTGCCGA CGAGAAGCTG CGGCTGGTGG AGAAGATCGT TCAGGGCCGC
GACTTCACCG CGATGATCGA GACGGTCAAT GCCGTCGATG CCTGGCTCGG CAGCCTGCCC
GGACACGCCT ATGCCAATGT CCGCCAGCCG CCGGTTTCGA CCTTGAATCT TGCGCACATG
ATCCCGTTGT CCGCCGTCTG GGCGGGTGAG GCGAAGGACG CGCATTTCGA TGCGCCGCCG
CTCTTCTATG GCAAGACCGA AGGCGCGACG CCGTTCCGCT TCTCGCTGCA TGTCGGCGAT
GTCGGCCACA CCCTCGTCGT CGGCCCCACA GGCGCGGGCA AATCGGTGCT GCTGGCGCTA
ATGGCGCTGC AATTCCGCCG CTATTCGCGC GCGCAGGTCT TCGCCTTCGA TTTCGGCGGC
TCGATCCGCG CCGCAGCGCT GGCCATGGGC GGCGACTGGC ACGATCTCGG CGGCGGGCTG
AGCGACGGCG ATGAGGCGTC GGTTGCCTTG CAGCCTCTGG CCCGTATCCA CGAGACCGCC
GAGCGTGGCT GGGCAGCGGA CTGGATTGCG GCGATCCTGC GTCGGGAGGG CATCGCCGTC
ACCCCCGAGG TCAAGGACCA TCTCTGGACG GCACTGACCT CGCTGGCCTC GGCTCCGGTC
GGAGAGCGCT CCGTCACCGG CTTCGCGGTG CTGTTGCAGT CGAACGGGTT GAAGCAGGCG
CTGCGGCCCT ATTGCATCGG CGGCCCCTCA GGCCGGCTGC TCGACGCCGA GGCCGAACAT
CTCGGCTCGG CCCCGGTGCA GGCCTTCGAG ATCGAGGGGC TGGTCGGCAC CGGCGCGGCG
CCCGCCGTCC TCTCCTATCT GTTCCACCGC ATCGGCGACC GGCTGGACGG CCGCCCGACG
CTGCTGATCA TCGACGAGGG CTGGCTGGCG CTCGACGACG AGGGGTTTTC CGGCCAGCTG
CGCGAATGGC TGAAGACGCT CCGGAAGAAG AACGCCTCGG TCGTCTTCGC CACGCAGTCG
CTGTCGGACA TCGACCATTC CGCCATCGCG TCGGCGATCA TCGAGTCCTG CCCGACGCGG
CTCTTGCTGC CGAACGAACG CGCCATCGAG CCGCAGATCA CCGCCATCTA TCGCCGTTTC
GGGTTGAACG ACCGCCAGAT CGAGATCCTC GCCCGGGCCA CCCCTAAGCG GGACTATTAC
TGCCAGTCCC GGCGCGGCAA CCGGCTGTTC GAGTTGGGCC TGTCGGAAAT CGGCCTCGCG
CTCTGCGCCG CATCGGCCAA GTCCGATCAG GCGCGCATCG CGGCGATCGA GTCTGAACAT
GGCCGCGAGG GTTTTCTGGC CGCCTGGCTG CACGACCGGG GCGTCGACTG GGCCGCCGGG
CTGATCCCGG ACCTCGCCGA TCTGGCGCCG GAGGAAGACG GCATGCCTGC ATCCAAGCAA
TCCAACTCAG AAGCGGCACT CTCTGATGGC GAGATGAACC TCGCCGATGG CGGGTTCCCC
GACCCGGAGG ACGGCCCTGC CGGTGACGAG ATCGAGCCTG GCGACGCCGA GGCAGCATCC
ATCCCCGCAG AAGCAGGACC AGAACCAAAC GCAGACAAGG AGATCGAGCC ATGA
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| Protein sequence | MMNLAEYRGS ASRLADFLPW AALVTPGVVL NKDGSFQRTA RFRGPDLDSA VAAELVAVAG
RLNNAFRRLG SGWAIFVEAQ RSEAATYPDS TFPDAASALV DAERKADFEQ AGSHFVSDYF
LTLLWLPPAE EAARAESWLY EGRETSGVNP WELLRGFTDR GDRVLALLDG FMPECAWLDD
GETLTYLHST ISTNRQRVRV PEVPMHLDAL LADQPLTGGL EPRLGDAHLR VLTITGFPTA
TTPGILDELN RIAFPYRWST RAILIDKPDA TRLLTRIRRQ WFAKRKSIAA ILKEVMTSEP
SALVDTDAAN KAADADLALQ ELGADVAGMA YVTATVTVWD ADPRLADEKL RLVEKIVQGR
DFTAMIETVN AVDAWLGSLP GHAYANVRQP PVSTLNLAHM IPLSAVWAGE AKDAHFDAPP
LFYGKTEGAT PFRFSLHVGD VGHTLVVGPT GAGKSVLLAL MALQFRRYSR AQVFAFDFGG
SIRAAALAMG GDWHDLGGGL SDGDEASVAL QPLARIHETA ERGWAADWIA AILRREGIAV
TPEVKDHLWT ALTSLASAPV GERSVTGFAV LLQSNGLKQA LRPYCIGGPS GRLLDAEAEH
LGSAPVQAFE IEGLVGTGAA PAVLSYLFHR IGDRLDGRPT LLIIDEGWLA LDDEGFSGQL
REWLKTLRKK NASVVFATQS LSDIDHSAIA SAIIESCPTR LLLPNERAIE PQITAIYRRF
GLNDRQIEIL ARATPKRDYY CQSRRGNRLF ELGLSEIGLA LCAASAKSDQ ARIAAIESEH
GREGFLAAWL HDRGVDWAAG LIPDLADLAP EEDGMPASKQ SNSEAALSDG EMNLADGGFP
DPEDGPAGDE IEPGDAEAAS IPAEAGPEPN ADKEIEP
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