| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3183 |
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| Symbol | |
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| ID | 4581747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 350279 |
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| End bp | 350881 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639770507 |
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| Product | conjugal transfer protein precursor |
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| Protein accession | YP_916960 |
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| Protein GI | 119385905 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCA GAACGCGCAC CACCTATCTC GCCGCAACTG CTGCCGCCGT GATGGTGATC
GGTGCTGTTT CCGTCACCGA CATCACGCCG CGGCTGATCT GGAACGCCAG CGCCAGCCTG
CCCATCGGCC TCTACCGCGT CGAACCGCCG ACCACGCTCA CCCTTGGCGA TCTGGTCGCG
GTCGATCCGC CCGAACCACT CGCCCAGTTC GTCACCGCGC GCGGCTATGT CGGCCCCGGC
GTGCCGCTGC TGAAGCGCGT CGCCGCCCTT CCCGGCACGC GGGTCTGCCG CACCGGCGCC
ACGATCACCG TCCAGGGTGA GGCCATCGGT GAAGCGCGCG AGCGCGACAG AATCGGCCGG
CCGCTGCCCA CCTGGCAGGG CTGCCAGGTC GTCGGCACGG ACGAGGTGTT TCTCATGAAC
CGGGAGGTCG GGGACAGCCT CGACGGCCGT TATTTCGGTC CGCTCCCGCT CGCCAGCGTC
ACCGCCCGCA TCGTCCCGCT CTGGATCGAT GCGGCGGGCG ACGGCCGCTT CCGCCGGCCT
GTGGCCGGCA CGGAAGGCGG CTCCCAGAAC CTCTCTCCAA CCGCAACCGA AGAGACCAAA
TGA
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| Protein sequence | MIRRTRTTYL AATAAAVMVI GAVSVTDITP RLIWNASASL PIGLYRVEPP TTLTLGDLVA
VDPPEPLAQF VTARGYVGPG VPLLKRVAAL PGTRVCRTGA TITVQGEAIG EARERDRIGR
PLPTWQGCQV VGTDEVFLMN REVGDSLDGR YFGPLPLASV TARIVPLWID AAGDGRFRRP
VAGTEGGSQN LSPTATEETK
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