Gene Pden_3104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_3104 
Symbol 
ID4581668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp289051 
End bp289884 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content69% 
IMG OID639770428 
ProductHupH hydrogenase expression protein 
Protein accessionYP_916881 
Protein GI119385826 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCAGA ATTTTCACCT GCCCCCTGTT GGTTTCGGCC CCGGATCGCA GCCCGACGAT 
GGCGAGGGGC TGGAGTGGCT GCCGCTGCCC TCCGGGATGC GCACCTATGA CATGCATCTG
CCCGAGGTCG GGAATGTCGC GTCTCTGGCG CCCGCGCTGG CGATGCTGGC CGAGATCGCC
GCGGCCTGCG ATCGTGTGGC CCAGGGGGCG GCGCCGGTGT CGTTCGATCT GTCCGCGCTG
GATGCGGCCA ACCGGGCGCT GATGGCGGAA ACGCTGGGTC AGGGCGAGGT GTCGCTGCGC
GCGCGGGGCG TGCCGGCGGT GGCCGTGCAG GAAAGCGTCT TTGCCGGGGT CTGGGTGCTG
AAGGCCGAGG GGATCGACCG GGTCGAGGTC GCGCCCGTGC CGCAGCTTGC CCTGACGCGG
GCGTTCCATG CGCAGCGCCC GGCGATCGGG GCCCTGGCCC CGCGCGCGCC GGGGGTGGTG
AACGCCCCTG CCTTGCTGGC TGAACTGATG GACAAATCCC TGTCCTGGCG TGGCCCCGGT
GATCTGCATG TGGTGAACCT GACCCTGATT CCGCATACCG AAGAGGATCT GCTCTGGCTC
GATCAGGCTC TGGGCGAGGG GTCGGTGACC ATCCTGTCGC GCGGCTATGG CAATTGCCGC
ATCACCGCGA CCGCGCAGGA TCGTCTGTGG CGGGTGCAGT TCTTCAACTC GATGGATGTG
CTGATCCTCG ATACCTTCGA GGTGACCGCC ATGCCCGAGG TGGTGCTGGC CGCGCCCGAG
GATCTGGCGG ACAGCGCGGG CCGCATTCGT GAAGTGCTGG GGGCGATCCG ATGA
 
Protein sequence
MAQNFHLPPV GFGPGSQPDD GEGLEWLPLP SGMRTYDMHL PEVGNVASLA PALAMLAEIA 
AACDRVAQGA APVSFDLSAL DAANRALMAE TLGQGEVSLR ARGVPAVAVQ ESVFAGVWVL
KAEGIDRVEV APVPQLALTR AFHAQRPAIG ALAPRAPGVV NAPALLAELM DKSLSWRGPG
DLHVVNLTLI PHTEEDLLWL DQALGEGSVT ILSRGYGNCR ITATAQDRLW RVQFFNSMDV
LILDTFEVTA MPEVVLAAPE DLADSAGRIR EVLGAIR