| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_3061 |
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| Symbol | |
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| ID | 4581625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008687 |
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| Strand | + |
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| Start bp | 240832 |
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| End bp | 242865 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639770385 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_916838 |
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| Protein GI | 119385783 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.26513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGGCG CGGACCACGG TGCTATCGAT CATTTGCAGT GCATGCGGGA CCGCGGCACG
ATTGAACTGG TCGGCATGGG CAGTATCGAA AACTCGTCGC GGGTGATCGT GGATGGCGCG
CTTGATCTTG AAAACAAGGG CAACGAAATC GCGTTCTGGG GGGTGTCGGA TGCCTATAAT
GATGCGAAGA TCCGCAATCT GGCCGGGTCG GGTTCGGTCT TTATCTATGA TAGCGATCTA
GTGCTGACTG CGGCACAGGA CACGTTCAGC GGGACTATCA GTTCTGTCGA CAGCGAGGGG
AGGCACCTTA AAGGCGGCCT GACGGTTCAG GGCGGTGTGC AGACGCTGTC GGGTGCGAAT
GTCTATTTCG GCGCGACCAA GGTCGACGCC GGTGCTGGGC TGGTCCTGAC CTCGACAGGA
AGCCTTGCAA GCGACGTGCT GGTTTCCGGT GGCTTCGTCA ACGATGGCGA TGTCGCGGGT
GATACCATCG TGCAGGATGG CGGTATGACC GGCGGTTCCG GCAGCTATAG CGCGCTGACG
GTCCTGGGCG GCGGCACGGT GGCCACCAAT GGCAAGACGC CCCTGACGGT CGGAAGCGAA
TTTACCCAGA AGGCCGGCTC TACGCTTGTC TTCGCGCCGG TCGAGAACGG CATCCAGCCC
GCTATCGCTG TCGGGGGGCG GGCCGTGATC GAAGACGGGG CAAGCATCAC GCTGGACCGC
GTTACGACCG GTCGGCTGGC GGTGGGGCGC GAATATGCGC TGGTTACCGC TGCGGGTGGC
CTTGTCGGCA ACTATGGCAG CCTGACCGGC GATCTGGTCA CCGATGCGCC TTTCCTGTCC
TTCGCGCTGG ACAAGACTTC TTCCGGCGTC GCGCTGGGGG TTGAACGGTC CGATATCGTC
TTTGCCGAGG TTGCGCACAG CGCCAACCAG ATTGCCGTCG CCAACGAGCT GGAGGCGCTT
GGCAGCGGCA ATGAGTTGCA TGACGAGGTT GCCTATATGA CCGCTGCCGA GGCTTCGGAT
CTGCCTGCGG CCTTTGATTC GCTCTCGGGT GAAATCCATA CCGCGATGCT GGGGGCAGTG
GCCGAGGAAA GACACTTCCT GCGCGATGCG GTGAACGGGC GCTTGCGGGC CGCCTTTGGC
ACGGTTGGCG CATACAAAGG GGGCGTGCAG GCCCTGACCG CATATGGGCC TGTCTCTGCC
GAGGCGACCA CCGACGGCCC GGTCTATTGG GGCCACGCCT TCGGCGGCCG GGGTGAGGCC
GATGGCGACG GCAATGCGGC ACGTCGTGAC AGCCGGACCA ACGGTGTGGT TTTGGGCTAT
GACGCGCCGG TTCAAAACTG GCGTCTGGGT GGCGTTCTGG CGATGAGCGA CAGCTCCTAT
GGGTTGGACG GCCGTGCCTC GTCGGGTTCG GGCCGGGGTA TCCACCTCGG GGTCTATGCC
GGCACGCAAT GGGGGCAGAC CGCGCTGCGC AGCGGGCTTG TCTATTCGAC GCTTCGGCTG
AAGGCGAACC GCAGCACCAG CCTTGGCACG ATCAACGAAA GGCTGTCGTC CAAATATAAC
GGGCATGTCT GGCAGGCCTT TGCCGAGGTC GGCCACCGGC TCGACCATGG CACGATGGCG
CTGGAACCCT ATGCCGGGCT TGCCCATGTC TGGATGCGCA CCGACAGTTT CGCCGAAAAC
GGCGGTGAAA CGGCGCTTGC CGGTGCGGAA GGCAAGATGG ACACGACCTT CGCCACAATC
GGGGTGCGCG CGGCCACGAC CATCGAGGCG GCGACCCACA AACTGACCGT CAGTAGCGGC
ATCGGCTGGC GTCACGCCTT TGGCGACGCG CGCCCGGAGC TGGCGATGGC CTTTGCAGGG
GGCACGGGCT TCAACGTGGC GGCGGCGCCG ATTGCCCGCA ATGCGGCGGT GCTGGATATG
GGGGTCGATA TGGAACTTGG CCGCAATACC AATCTGAGGC TGGACTATCA GGGCCAGCTT
GCCACGGATG CGCGCGAGCA TCGGCTGGGC GCCACTCTCG GCATGCAGTT CTGA
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| Protein sequence | MMGADHGAID HLQCMRDRGT IELVGMGSIE NSSRVIVDGA LDLENKGNEI AFWGVSDAYN
DAKIRNLAGS GSVFIYDSDL VLTAAQDTFS GTISSVDSEG RHLKGGLTVQ GGVQTLSGAN
VYFGATKVDA GAGLVLTSTG SLASDVLVSG GFVNDGDVAG DTIVQDGGMT GGSGSYSALT
VLGGGTVATN GKTPLTVGSE FTQKAGSTLV FAPVENGIQP AIAVGGRAVI EDGASITLDR
VTTGRLAVGR EYALVTAAGG LVGNYGSLTG DLVTDAPFLS FALDKTSSGV ALGVERSDIV
FAEVAHSANQ IAVANELEAL GSGNELHDEV AYMTAAEASD LPAAFDSLSG EIHTAMLGAV
AEERHFLRDA VNGRLRAAFG TVGAYKGGVQ ALTAYGPVSA EATTDGPVYW GHAFGGRGEA
DGDGNAARRD SRTNGVVLGY DAPVQNWRLG GVLAMSDSSY GLDGRASSGS GRGIHLGVYA
GTQWGQTALR SGLVYSTLRL KANRSTSLGT INERLSSKYN GHVWQAFAEV GHRLDHGTMA
LEPYAGLAHV WMRTDSFAEN GGETALAGAE GKMDTTFATI GVRAATTIEA ATHKLTVSSG
IGWRHAFGDA RPELAMAFAG GTGFNVAAAP IARNAAVLDM GVDMELGRNT NLRLDYQGQL
ATDAREHRLG ATLGMQF
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