| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2943 |
|---|
| Symbol | |
|---|
| ID | 4581510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 109715 |
|---|
| End bp | 111163 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639770270 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_916723 |
|---|
| Protein GI | 119385668 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.587642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAGA CCTTGCCTCT TTCCCGCCGC GGCCTGCTGG GCGGGCTTGT CTCGACCCTG
GCGCTGGCCG CCTGCAACCC GGTCAGCCAT ACCGCGCCCC GCGCCGAGGT GGCCGGCGCA
TTCGCCGCCA GTTCCCCGGC CCGCCGCGCC GGCGCCAACG CCTGGTGGGC GGCATTTCGC
GACAAGCGGC TGGACGGGCT GATCGCCGCC GGGCTGAATC GCAACCTGGA CGTGCAGACC
GCCGTCGCCA CCATCCGCGA GGCGCAGGCC AATGCGCGGC TGGTCGGCGC CAGCGACCTG
CCGCAGGTCG AGGCGCAGGG CGCGGCGGCG CGCAACCGCA GCGAGACCGG CATCGTCGAA
AGCAGCTCGG CCACGCTGGG CGTGTCCTGG CTGGTCGATC TGTTCGGCCA GAACCGGGCG
GCGCGGCAGG GCGCCTCGGC CCGGCTGGAC GCGGCCTATC TGTCGGCCGA GGTGGCGCGG
CTGACCGTGG CAAGCGCCAT CGCCTCGGCC TATGTCGACG CGCGCTATTA CCAGGAGGCG
CTGGCGCTGA CCCGGCAAAG CCTGACCAGC CGCAAGCGCA CGCTGGAGAT GACCCGCACC
CAGGACGCCT TCGGCAGCGT CTCGCGGCTG GAGGTGCTGC AGGCCGAGCA ACTGGTGGCT
CAGGCCGAGG CGGCGCTGCC CGGGCTGGAG GTCGGCTTCG ACCAGTCGGT GAACCGGCTG
GCCACGCTGA CCGCCGGGCG CAGCGCCGAT CTGGCGGCGC AGCTGCGCCA GGGCGGCGGC
CAGCCGCGCG CCCGCTACAG CGCCAGCGTC GGCGTGCCGG CCGACGTGGT CCGGGTGCGT
CCCGACGTGC GCATGGCCGA GCGCAACCTG GCCGCCGCCG CCGCCGATGT GGGCGAGGCG
CAGGCGGCCT TCTATCCGCG GCTGACGCTG TCCGGCTCGA TCACGCCGAC GAATATCGGC
GGCGGTGGCA GCAGCAAGAG CTGGGGCTTC GGGCCGCAGA TCTCGCTGCC GCTGTTCTCG
GGCGGGGCGA ACCAGGCGCA GCTTTCCGCC GCGCAGGCGC GGGCGGAACA GGCGCGGCTG
GCCTGGCAGG CCTCGGTCCT GGGCGCGGTC GAGGAGGTCG AGAACGCGCT GGCCGGCTAT
AACCGCGACG CCCGCGCCGT CGCCGCGCAA TCGCGGCTGG TCGAGAATGC GCGCGAGACG
GTGAACCTGA CCCGCAGCTC CTATGAGCTG GGCGAGGCGG ATTTCTTCCC GGTCCTGGAT
GCCGAGCGCA GCCTGCTGTC GGCCCGGCAG GAACTGGCCG CGGCGGTGCG CCAGCAGGCG
CTGAACTTCG TCGCGCTCAG CGCCGCCTCG GCCGGGGGTG TCGGCCTGCC CGCCACCTCA
GGGATTGACC GCCCGGCGGG AAACGGCCAT GTTCCCCTCA CGTCAGGGGA GTCCCGCCTA
GGGGACTGA
|
|---|
| Protein sequence | MIQTLPLSRR GLLGGLVSTL ALAACNPVSH TAPRAEVAGA FAASSPARRA GANAWWAAFR
DKRLDGLIAA GLNRNLDVQT AVATIREAQA NARLVGASDL PQVEAQGAAA RNRSETGIVE
SSSATLGVSW LVDLFGQNRA ARQGASARLD AAYLSAEVAR LTVASAIASA YVDARYYQEA
LALTRQSLTS RKRTLEMTRT QDAFGSVSRL EVLQAEQLVA QAEAALPGLE VGFDQSVNRL
ATLTAGRSAD LAAQLRQGGG QPRARYSASV GVPADVVRVR PDVRMAERNL AAAAADVGEA
QAAFYPRLTL SGSITPTNIG GGGSSKSWGF GPQISLPLFS GGANQAQLSA AQARAEQARL
AWQASVLGAV EEVENALAGY NRDARAVAAQ SRLVENARET VNLTRSSYEL GEADFFPVLD
AERSLLSARQ ELAAAVRQQA LNFVALSAAS AGGVGLPATS GIDRPAGNGH VPLTSGESRL
GD
|
|---|
| |