| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2940 |
|---|
| Symbol | |
|---|
| ID | 4581507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | + |
|---|
| Start bp | 104685 |
|---|
| End bp | 105251 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639770267 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_916720 |
|---|
| Protein GI | 119385665 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.333542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA AGCGCACGAT CGACCGCGAC GAGCTGATGG CCGCCATCGA GCGGGTGGCG
CGGCGCTCGG GCATCACCGG GCTCAGCATC GACGCCGTCG CCAAGGAGGC GGGGATCAGC
AAGTCCAGCG TGGTCTATGA TTGCGACAGC AAGGCCGGGC TGCTGGCCGC CTTCATCCGC
CACAAGATGG CCCAGCATCA GGCGCGCTTC GTCGAGATCC GTGCCCGGCG CGAGGGCGAG
CCGAACGCGC GGCTGCGCGC GCTGATCGAC GAATACCGCC GCGTGCCGAC CGACGAGGAG
CTGGACATGG CGCTGCTGGT CAGCGCCAGC ATGGGCGAGC ATGCCGAATG CCGCGAGATC
ATGCGCGAAA AGCTGGCCAG CGATGCCGAG ACGGTGGCGG CCCAGGCGGC CGACCGGCGG
CGGATGCTGA TGGCGCTGCT GACGCTGCAC GGCATGGCGT TCCTGGAATA TTTCGGCTTC
CACCGTTTCG ACCAGGAAAC CCGCAACGAG ATCCTTGATG AATTGATGGC GGTCGCGGAA
AGCGACCCCG GCGCAGCCGG AGACTGA
|
|---|
| Protein sequence | MGRKRTIDRD ELMAAIERVA RRSGITGLSI DAVAKEAGIS KSSVVYDCDS KAGLLAAFIR
HKMAQHQARF VEIRARREGE PNARLRALID EYRRVPTDEE LDMALLVSAS MGEHAECREI
MREKLASDAE TVAAQAADRR RMLMALLTLH GMAFLEYFGF HRFDQETRNE ILDELMAVAE
SDPGAAGD
|
|---|
| |