| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2784 |
|---|
| Symbol | |
|---|
| ID | 4581363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 2804552 |
|---|
| End bp | 2805085 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639770110 |
|---|
| Product | preprotein translocase subunit SecB |
|---|
| Protein accession | YP_916564 |
|---|
| Protein GI | 119385508 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1952] Preprotein translocase subunit SecB |
|---|
| TIGRFAM ID | [TIGR00809] protein-export chaperone SecB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.351495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AGAACAACAG CGGCGCCGCC GCGCCCGAGG CCCAGAATCC CGGGCAGAAT
GCCGCCCAGC CGGCCGTGCG GTTGCAGATC CTGACGCAGT ATATCCGCGA CCTGTCCTTT
GAGAACGCGG TGGCGCAGAA GGGCCTGCCC TCGGGCGAGG TGCAGCCGGA AATCAGCGTG
CAGGTCAGCC TGGATGCCCG CAAGCGCCCG GCCGAGCACC AGTATGAGGT GATCAGCAAG
TTCCGCGTGC AGTCCTCGAA CGCCACGGAC AAATCGCCCT TGTTCCTGTG CGAGCTGGAT
TACGGCGGCA TCTTCCATGT CGAGGGCGTG CCCGAAGACC AGTTGCACCC CTTCCTGATG
ATCGAATGCC CGCGCATGAT GTTCCCGTTC GTGCGGCGCA TCGTCTCGGA CATGACCCGC
GACGGCGGCT TCCCGCCCTT CAACATGGAC CCGGTGGATT TCGTGGCGCT TTACCGGCAA
GAGATCGCGC GCCGGACGCA GGCCCAGCGG CCCGCCGACC AGCCACTGTC CTGA
|
|---|
| Protein sequence | MSDENNSGAA APEAQNPGQN AAQPAVRLQI LTQYIRDLSF ENAVAQKGLP SGEVQPEISV
QVSLDARKRP AEHQYEVISK FRVQSSNATD KSPLFLCELD YGGIFHVEGV PEDQLHPFLM
IECPRMMFPF VRRIVSDMTR DGGFPPFNMD PVDFVALYRQ EIARRTQAQR PADQPLS
|
|---|
| |