| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2649 |
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| Symbol | fliF |
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| ID | 4581194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 2657379 |
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| End bp | 2658959 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639769978 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_916432 |
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| Protein GI | 119385376 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGGCGG TTTTGCTGAA ACTGCAGGAC TACTGGCGCG ACAGAAGCAC GAAGCAGAGG
GCCATGCTGG CGGCGGCCTT CCTGTTCACA TTTGCCGCCA TTGCGGGATT GTCCTGGATG
GCCAGCCGGC CCGGCATGGC GCTGCTCTAT TCCGGGCTCG ATCCGCAGCA GTCCGGCGCG
GTGATGGCCG CGGTCGAAAA ATCCGGCGTC CCCTATGAGA TCCGGGGCGA TTCCATCTGG
GTCGCGGAAA GCCGCCGGGA CGAATTGCGC ATGACGCTGG CCGGCGAGGG GCTGCCCTCG
GCCGGCGGCT CAGGCTACGA GATTCTCGAC GGCATGTCGG GCTTCGGCAC CACCTCGCAG
ATGTTCGATG CCGCCTATTG GCGTGCCAAG GAAGGCGAAT TGGCGCGCAC CATCCTGGCC
TTGCCGAACG TCAAGGCGGC GCGCGTGCAT CTGGCCGTGC CGCAGGGCCG CGGCTATCGG
CGCGAGGCCG AGGCGACCGC TTCGGTCACG CTGACGACCG ACGGCACGCC GATCAGTCGC
AATCAGGCGA AAGCATTGAA GTTCCTTGTC TCCTCTGGCG TGCCGGGCAT GACGGCGGAT
CGGGTCGCGG TGATCGACAG CGAACGCGGC GTGATTTCCT CGGGCGAGGA TTTCGACGGC
GAGGATCGCG AGGCCGAGAT GAAACGCAAT GTCGAGCGCA TCCTGGCCGC ACATGTCGGC
CACGGCAATG CCATCGTCGA GTTGCATCTG GACGTGGTCA ACGAATCCGA ACTGCTGACC
GAGCAGCGTT TCGACCCGCA GGAAAGGGCG CTGATCTCGC AGGAAAGCGA GGAAAGCGCC
GATCAAAGCA GCAATGCGCA ACAGGGCGCG GTCACCGCCG CCTCGAACCT GCCCGAGGGC
CAGGACAGTG CCGGGGATCA AAGCCGATCC TCGCGGTCGG AGACCCGCCA GCGCTCGAAC
TTCGAGGTCA GCAAGATCAC GCGCGAGGTG ACGCGCCAGC CCGGCGCCAC CCGGCGCCTG
ACCGTGGCCG TGCTGGTGAA CGGGGTCGCC CGGACAGAGG CCAACGGCGA AGCCACGCTG
GTGCCGCGCG AAGAGACCGA GCTTCAGGCG ATCCGAGAAC TGGTCGCCTC GGCCGTGGGC
TTCGACGAAG GGCGGGGCGA CGCGATTACG GTGAAATCGC TGCCCTTCGC CTCGCTTTCC
CAGGCAGGCA CGCTGGCCAG CGCCGGCGGT TTCCTGTCGA GGCTGGACCT GAACGGGCTG
ATCCGCATCG CCCTGGTCGG GTTTTTCGCA CTGGCACTGG CGGCATTCCT GTTGCGCCCG
CTGTTGAGGT CGAAACCTGC GGGCAGTCCG GGCCAGGCCA TGCTGGATCG CCCGGAACGG
CCGCCGGCTC TTGCGGGTGC CAGGACCGAG GGCGCCCCGG CCCCCGCCGT TGCCAATGTC
GTTCCCGAGA TCGACTTCGC GCCCGCGGGG ACGGACGGCA GCGATCCGGT GGGGCGGCTC
AAGGAGCTGA TGAAATCGCG CAAGGACGAA AGCCTGCAAA TCCTGTCAGG CTGGATCGAG
AAGCGTGAGG ACGCCGTATG A
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| Protein sequence | MGAVLLKLQD YWRDRSTKQR AMLAAAFLFT FAAIAGLSWM ASRPGMALLY SGLDPQQSGA
VMAAVEKSGV PYEIRGDSIW VAESRRDELR MTLAGEGLPS AGGSGYEILD GMSGFGTTSQ
MFDAAYWRAK EGELARTILA LPNVKAARVH LAVPQGRGYR REAEATASVT LTTDGTPISR
NQAKALKFLV SSGVPGMTAD RVAVIDSERG VISSGEDFDG EDREAEMKRN VERILAAHVG
HGNAIVELHL DVVNESELLT EQRFDPQERA LISQESEESA DQSSNAQQGA VTAASNLPEG
QDSAGDQSRS SRSETRQRSN FEVSKITREV TRQPGATRRL TVAVLVNGVA RTEANGEATL
VPREETELQA IRELVASAVG FDEGRGDAIT VKSLPFASLS QAGTLASAGG FLSRLDLNGL
IRIALVGFFA LALAAFLLRP LLRSKPAGSP GQAMLDRPER PPALAGARTE GAPAPAVANV
VPEIDFAPAG TDGSDPVGRL KELMKSRKDE SLQILSGWIE KREDAV
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