| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2615 |
|---|
| Symbol | |
|---|
| ID | 4580714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 2627184 |
|---|
| End bp | 2629964 |
|---|
| Gene Length | 2781 bp |
|---|
| Protein Length | 926 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639769944 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_916398 |
|---|
| Protein GI | 119385342 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | [TIGR03607] patatin-related protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0888746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGAAC GGGCTACGGG TGAGGTGCGC TTCGCGGTCG TCCTTTATGG CGGCGTCTCG
CTGGCGATCT ACATGAACGG CATCGCGCAG GAGTTGCTGC GCATGGTCCG CGGCAGTTCC
GACCTGCCGG ACGAGGAACT GGCCCCGGGC GAGTTGATCT ATCGCCGGCT GTCGCGCGAG
CTTGCAGGAC CGCGCGGCGG GCGAAAGCGG TTCGTGATCG ACATCATCTC GGGCACTTCG
GCGGGCGGGA TCAACGGCGT GGCGCTGGCC AAGGCGCTGG TCGCGGGCGC CCGCGACATC
GACATCCTGC GCGAGGCATG GACGGAAAAG GCCGATATCG GCCAGTTGCT CAACGACCGG
CAGGGCATCG CCGGCCGCCT GCGCCCGACC GAATCGCTGC TGGACGGCGG CCACATGTTC
GAGGTGCTGC ACGACACGCT GGCCCGGCTG ACCGGCAACG GCCGGCCGCT GGCCGAGACG
GTGGACCTGT TCGTCACCGC CACCGACCTG CGCGGCCGGC AGGCGCCCAT CCACCTGACC
GGCGCGCGGC TGGACGAAAG GGTTCATCGC AAGGTGTTCC ATTTCGCCTA TGACGGGTCC
GGCCGCAACG ATTTCGGTCC CGGAAACGAA GCCATGCTGG CCTTTGCCGC GCGCTGCACC
TCGTCCTTTC CGGTGGCCTT TCCGCCGATG CGCTTTGCCG ACATGCCCGC CGCGGCGCAG
GATGCCGGCT TCGCCCGCTT CTTCGACCAC GACCCGGATT ATGCCGGCCG GCTGTTCGCC
GATGGCGGCT ATCTGGACAA CCGGCCCTTC AGCTATGCGA CCGAGCTGAT CCCCTCGCGC
CCGACCACCC TGCCGGGCGA GCGCAAGCTT CTGTTCATCG ATCCCTTCCC CGAGGCGCCC
TCGCAGTCCG GCCAGGCGCC CGAGCCGCTG GACTTCCTGC AAAACGCCCA GCTCGCGCTG
ACCGGCCTGC CGCGTTACGA GGTGATCCGC GACGACATCC GCGCCATCGC CCGCATGAAC
CGGCGGCTGG AGCGGCTGGG CGCCCTGCAG AACCGCTGGC GCGAGGACCA GAACCGGGTC
GAGGCGGCCG GGCGCAAGAT GCGGCAAAGG CGCAAGCCGG TCGACCTGGA CCGGATGGAC
CTGGCCGACC TGATGACGGG CGCCTTTCAA TATCCGCAGA ACTACCCGCT TTATCACCAC
CTGCGGGTCT ATGGCACGAC CGACGGGCTG TCGGCGATCG TGGCCGGGTT GGCGGGGCAC
CAGCCGGATT CGGACGTGGC GCTGTATCTG CGCCAGATCC TGCGCGCCTG GCGCGACGAC
GGCTTCAGTG CCTATCACGC CGAGGGGCGC GAGACCGAGA ACGCCTTTCT GTCACGTTAC
GACCTGGATT TCCGGCTGCG CCGGCTGATC CACCTGCGCG CCCATATCGA CGAGGCGCTG
GACCGGCGCG AGCGTATCCA GGGCGAAAAG GTCGCGCTGC ACCTGCCGCC CGAATTGCTC
GCGCCCCTGC GTGACCGGAT CGAGGAGGAA CTGGCCGATC TTCGCCGCCT TGCCAGCCCC
GACAGCAGCC AGGCCCAGAC CCTGCTGGCC GGCACCGAGA TCGGGCGGCT GGACGGGCTC
ATTTCGGCCG AATACAGCGC GGTGATGAAG CTTGCGACGC TCGACCAGCG ATATGGCAAG
GCGCGCGAGA TCTATCGCAG CACGGACATC AAGGCGCTGG TGGACAAGGC GCTGGCCAAG
CTGGGCCGGG ACATGCGCGC CGCCTTCGAC GCCAGCAGCG CCCGCATCCG CGCCGACCTG
GCCGCGCCCG AGCTCAAGCC GCTGCTGGAC GTCTATGACG ATTTCCACTG GCACGACGTG
ATGACATATC CCTTCCTGGA GGGTTCGGAG CTTCAGGAGC ATTCGCAGGT CGAGGTGTTC
CGCGTCAGCC CCGCCGACAG CGGGTTGAAC CCGCGGCCCG ACAAGCTGGC GGGCATCGCC
GTCGGTGCCT TCGGCGGTTT TCTGAACCGC GACTGGCGCG AGCATGACAT CCTGTGGGGG
CGGCTGGACG GGGCCGAGCG CATCGTCGCG GCGCTGATGT CCGACCGCCC CGAGGCCGAG
CGCGCCGCCT GGACGCAGGA GATCCAGAAC CAGATCCTGC GCGAGGAATA TGGCGAGGCC
GCCGGACAGG CCCGCCGGCT GGCGCTGCTC AAGGCCAAGC TGCGCGATGC CCGCATCGAC
GAGGACGCCT TCGAGGAAAC CGCCGCCCAG GCGCTGGGGG TCAAGGACGC CGCCGAATTG
GACCTGCGGC GTTTCGGCGC GCATTACAAG GATCTGAAGC CCGTCGGCCC GCGCCCGCCC
GAGATCGCCG GCTGGGGCAG CCGTGGCATG GCGATCCTGT CGCGCATGAT CGACGACTTG
CCCGACGATG GCATCCTGCG CATGCTCGGC ACCCGGGCGG CGACGGCTTT GCGGGCCGGG
GGCGGGCTGA TCTCGGGCTT TGCGCGCTTC GCCATGCCGG GCAGCTATTG GCGGATGCTG
GCGGACAAGA TGCTGTTTCT GGCCATGCTG GCGGGGTTGC TGGTCGTGCT GATGGCGCCG
TGGCTGGGCG TGGCGGCCGC CAGGATCGGC TGGCTGCTGC TGGCGGCGGC GGTCGCGATC
TGGCTGCTGC TCTACAGCTT CGGGCGCTGG TTGCGCGGCA GGGACAGCTT GCCGCAGGCG
CTGCGCTGGC TGGCGATCTT CGTCGCGCTG GCCCTGATGG GCGTGGGGCT GCGGACTGTC
GCAAATCACC TGTTCGGCTG A
|
|---|
| Protein sequence | MVERATGEVR FAVVLYGGVS LAIYMNGIAQ ELLRMVRGSS DLPDEELAPG ELIYRRLSRE
LAGPRGGRKR FVIDIISGTS AGGINGVALA KALVAGARDI DILREAWTEK ADIGQLLNDR
QGIAGRLRPT ESLLDGGHMF EVLHDTLARL TGNGRPLAET VDLFVTATDL RGRQAPIHLT
GARLDERVHR KVFHFAYDGS GRNDFGPGNE AMLAFAARCT SSFPVAFPPM RFADMPAAAQ
DAGFARFFDH DPDYAGRLFA DGGYLDNRPF SYATELIPSR PTTLPGERKL LFIDPFPEAP
SQSGQAPEPL DFLQNAQLAL TGLPRYEVIR DDIRAIARMN RRLERLGALQ NRWREDQNRV
EAAGRKMRQR RKPVDLDRMD LADLMTGAFQ YPQNYPLYHH LRVYGTTDGL SAIVAGLAGH
QPDSDVALYL RQILRAWRDD GFSAYHAEGR ETENAFLSRY DLDFRLRRLI HLRAHIDEAL
DRRERIQGEK VALHLPPELL APLRDRIEEE LADLRRLASP DSSQAQTLLA GTEIGRLDGL
ISAEYSAVMK LATLDQRYGK AREIYRSTDI KALVDKALAK LGRDMRAAFD ASSARIRADL
AAPELKPLLD VYDDFHWHDV MTYPFLEGSE LQEHSQVEVF RVSPADSGLN PRPDKLAGIA
VGAFGGFLNR DWREHDILWG RLDGAERIVA ALMSDRPEAE RAAWTQEIQN QILREEYGEA
AGQARRLALL KAKLRDARID EDAFEETAAQ ALGVKDAAEL DLRRFGAHYK DLKPVGPRPP
EIAGWGSRGM AILSRMIDDL PDDGILRMLG TRAATALRAG GGLISGFARF AMPGSYWRML
ADKMLFLAML AGLLVVLMAP WLGVAAARIG WLLLAAAVAI WLLLYSFGRW LRGRDSLPQA
LRWLAIFVAL ALMGVGLRTV ANHLFG
|
|---|
| |