| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_2088 |
|---|
| Symbol | |
|---|
| ID | 4578952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 2089105 |
|---|
| End bp | 2091972 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639769418 |
|---|
| Product | endonuclease |
|---|
| Protein accession | YP_915876 |
|---|
| Protein GI | 119384820 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.895956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.207443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATTT CAAACCAGAA GGCCTTCGAT TCAATCCTTT CCATGGCCCA GAATATGCTC
CGCCTTGCTG CGGAACGCGC TCAGAGCCCT GTCACTCCGG AAATGATCGA GAAGGAGCTG
ACCAAGCTGT CGATCATGAT GGAGGACGAT TTCGCCCTTG TTGATCGGGA CGCGCTCGTT
GACGAACTGA TCCGCCGGTC AAGCCGCACG GTGGGCGAGA ACGCCACCCT GTCGAGCGGT
GAGGACCATG TTGCCTGGCT TGATGCAGAA AGAAAGAAGG GCTGGACCTA TTGGCAGCGC
TACTCGGAGT ACATGGAAGC GCGAATCCCC TGGACAGCCC TCGACGCGCT CGACGTCGCC
ACTGACGAAG TCCTCTCACA GCTCGAGGAC CCGACCCGGG AAGGCGCGTG GGATCGTCGC
GGACTGGTCG TCGGCCACGT TCAGTCGGGG AAGACAGGCA ATTATACCGG ACTGATCTGC
AAGGCCGCCG ACGCTGGATA CAAGATCATC ATCGTGCTCG CCGGCCTGCA CAACAACCTC
AGAGCACAGA CCCAGATCCG CCTGGACGAG GGGTTTCTCG GTTTTGCCAC CATCGCGGAT
GCTGACGAGC TCCCAGCAGT GGGGGTCGGA TTGATCGACA AGGACATGTC GGTCCGTCCC
AATGCTGCAA CGAATCGGAG CGACAAGGGC GACTTCAACA CGGCCGTTGC CGCGAAGATG
AATATCAGCC CGGAACAGCG ACCGTGGTTG TTCGTCGTCA AGAAGAACAA GACGGTGCTG
GAGCGCCTGC TGCACTGGAT CCGCAACCGA GTGGCCAATC ACGTCGACCC CGAAACGGGT
CGCAAACTCG TCACCAACCT GCCTCTCATG GTGATCGACG ACGAGTCCGA TCACGGATCG
GTCGACACCG GTGAAGATGT CGTGGACGAG TTCGGCAACC CGGATCTCGA ACACGAGCCC
AAGACGATCA ACAGGTTGAT CCGGTCGATC CTCCACCATT TCTCGCGGAA GGCCTATGTC
GGTTACACGG CGACACCCTT TGCAAACATC TTCATTCATG ACCGCGGGGA GACTCAGGAG
CACGGACCGG ACCTCTTCCC CGCAGCCTTC ATCACCAGCC TTGCGGCGCC ATCGAATTAT
GTCGGACCGG GCCGTGTCTT CGGATCAGCT TCCAGCACGC CGGAAGACCT GCCTCTGGTG
CGCCCGCTTT CGGACGATGA GTTCCAGCCG TGGATGCCGC CACGACACAA GAACGGTTAC
CGGCCGCGAT GGCAGGGGGA GGACCGTGTG CCGGACTCGC TCGCAGAAGC GATCCGCTCC
TTCGTCTATG CCTGTGCCGT GAGGAAGCTG CGTGGACAGG GCAGCAAACA CTCCTCGATG
CTCATCCACG TTACCCGCTT CACTTCGGTA CAGAACGCTG TCGTCAACCA GGTCGCAGAG
TACGTGCGAG ATCTGAAGGG CCGCTACACC CGCGGCATCG AGCTCGACAA CCTCGAGGCG
TCAATGCGCA CGGAGTATCA GGAAACCTTT CTGCCAGGGA TGCAGCGTAT CCGTTCCGCC
CTCGTCGAAG GCGAAGCGCT GGAGGACTTC TCGTGGGCCG ACATTCGCGC CGTCCTCCCC
GACGTGCTGT CCGACATTCG CGTCCGCGAG ATAAACGGCA CGGCCAAGGA CGCACTCGAC
TACGCCGAAA ATGATGGCAC CGGCCTCAAG GTGATTGCCA TCGGTGGCGA CAAGCTGGCG
CGCGGTCTGA CGCTGGAGGG TCTCTGCACA AGCTACTTCC TTCGGACCGC GCGCATGTAC
GACACGCTCA TGCAGATGGG GCGCTGGTTC GGCTACCGCG ACGGCTACCT CGATGTCTGC
CGCCTCTACA CGTCGCAGGA AATGGTGGAG TGGTTCGGCC ATATCGCCGA TGCCGCCGAA
GAGTTGCGTC AGGAGTTCGA CAACATGGTC GCGGCCGGCG CCACGCCAAA ACAGTTCGGT
CTGCGTGTGA AATCGCATTC GGTGCTGACG GTGACCTCTC GGGCCAAGAT GAGAAACGCT
CGAGCGATGC AGCTGACCTA TTCGGGCGAT CTTCTGCAGA CTATCGTGTT CCCCAACCGC
AAGGACGACA TCACGGCGAA CTTCAAGGCC ACGGATCGGT TCATCAACGC ACTCGGTCCA
TCGACGGATC TGAATGATCA GCATTTCGTT CCACAAGGTC AGAAGTGGAA CGGTCACCTT
TGGCGAGATG TGCCAGCCCT GAGCGTCATC TCGTTCCTGC GGGATTACAG AACCCACCCT
GCCAGTTTCC GGATCATGAG TCCGCTGATT GCGGACTTCA TCGAGGAGAT GAACAAGGAT
AGCGAGCTTA CGAGCTGGAC AGTTGCGCTG ATCGGAAAGG ACGCGGGCCC GGACGACAAG
TACCGTAAGG TCGGCGGCTC TTCGGTCAAC ATGCTGAAGC GGAGGAGAAC GACCGAACAT
GCGGATCGTT ATTCTATCAA GACCCTGATC TCGCCTCGCG ATCAGGCCAT CGATCTGACG
GAAGCAGAAT GGAAGGCTGC GCTCGGCCTC AGCCAGAAAA CGTGGCGCAA CGATACCGAT
CGCAACGAGG GCAAGGAGCC TCCGTCAGAG CCGAGAGGTC CGCAGATCCG TCACATTCTC
GGGGAAGGAG ACGCCGAAGC AGGCGTCCGG GCGCGCCGGG AGCGTGGTCT CCTGATGCTC
TATCTGCTCG ATCCCGAGGG TGCCGAGGTC GAAGAGCTAA AGGATGCCGA TCCCGTCGTC
GCCTGGGCAA TCAGTTTTCC GTCAAGCAAC TCCGAGAGAA GGGTCTCCAA TTCGAGGTAC
ATCGCCAACA GCGTACTGTG GGGAGGCCTC AATGAGTGGG TGGACTGA
|
|---|
| Protein sequence | MTISNQKAFD SILSMAQNML RLAAERAQSP VTPEMIEKEL TKLSIMMEDD FALVDRDALV
DELIRRSSRT VGENATLSSG EDHVAWLDAE RKKGWTYWQR YSEYMEARIP WTALDALDVA
TDEVLSQLED PTREGAWDRR GLVVGHVQSG KTGNYTGLIC KAADAGYKII IVLAGLHNNL
RAQTQIRLDE GFLGFATIAD ADELPAVGVG LIDKDMSVRP NAATNRSDKG DFNTAVAAKM
NISPEQRPWL FVVKKNKTVL ERLLHWIRNR VANHVDPETG RKLVTNLPLM VIDDESDHGS
VDTGEDVVDE FGNPDLEHEP KTINRLIRSI LHHFSRKAYV GYTATPFANI FIHDRGETQE
HGPDLFPAAF ITSLAAPSNY VGPGRVFGSA SSTPEDLPLV RPLSDDEFQP WMPPRHKNGY
RPRWQGEDRV PDSLAEAIRS FVYACAVRKL RGQGSKHSSM LIHVTRFTSV QNAVVNQVAE
YVRDLKGRYT RGIELDNLEA SMRTEYQETF LPGMQRIRSA LVEGEALEDF SWADIRAVLP
DVLSDIRVRE INGTAKDALD YAENDGTGLK VIAIGGDKLA RGLTLEGLCT SYFLRTARMY
DTLMQMGRWF GYRDGYLDVC RLYTSQEMVE WFGHIADAAE ELRQEFDNMV AAGATPKQFG
LRVKSHSVLT VTSRAKMRNA RAMQLTYSGD LLQTIVFPNR KDDITANFKA TDRFINALGP
STDLNDQHFV PQGQKWNGHL WRDVPALSVI SFLRDYRTHP ASFRIMSPLI ADFIEEMNKD
SELTSWTVAL IGKDAGPDDK YRKVGGSSVN MLKRRRTTEH ADRYSIKTLI SPRDQAIDLT
EAEWKAALGL SQKTWRNDTD RNEGKEPPSE PRGPQIRHIL GEGDAEAGVR ARRERGLLML
YLLDPEGAEV EELKDADPVV AWAISFPSSN SERRVSNSRY IANSVLWGGL NEWVD
|
|---|
| |