| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1763 |
|---|
| Symbol | |
|---|
| ID | 4580927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1752032 |
|---|
| End bp | 1753546 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639769078 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_915556 |
|---|
| Protein GI | 119384500 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.267477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.301135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAATG TTTTCCGGGC CGAGGGCCTG GGCAAGACCT ATCCCGGCGT GCGCGCCAAC
GACGACGTGT CCTTCGCGGT CGAGGCCGGC GAAATCCATG CCCTGCTGGG CGAGAACGGC
GCCGGCAAGT CCACGCTGGT CAAGATGATC TATGGCCTCG TGCGGCCGGA CGAGGGGCAG
ATGGCGTTGC TGGGCGCGCC TTACGCGCCG CATGACCCGC GTGCGGCGCG CGCCGCGGGC
GTCGCCATGG TGTTCCAGCA TTTCAGCCTG TTCGACGCGA TGACGGTCGC CGAAAACGTC
GCGCTGGGGA TGGAGAACCC GCCGCCGCAG CCCGAGCTTT CGCGCCGCAT CGCCGACCTG
TCGCAGGGCT ACGGCCTGCC GCTGAACCCC GCGCGCCGCA TCGCCGCGCT GTCGGCGGGC
GAGCGGCAGC GGGTCGAGAT CCTGCGCTGC CTGCTGCAGA ACCCGCGTCT GCTCATCATG
GACGAGCCGA CCTCGGTGCT GACCCCGCAG GAGGCCGAGA TCCTGTTCGC CACCCTGCGC
CAACTGGCCG AAGCCGGCAC GGCGATCCTG TATATCAGCC ACAAGCTCGA AGAGATCCGC
AGCCATTGCG ACCGCGCCAC CATCCTGCGC CAGGGCAAGG TGGTGGGCAC GGTCGATCCG
CGCGCCCATT CCGCCCGCGA ACTGGCGGCG ATGATGGTCG GGGCCGAGAT GCGGCTGGTG
GACCGATCCG GCCGCAAGCC CGCCGCACCC GTGCTGCAGG TTCGCGGCCT TTCCACGGCG
GGCGGCGAGG GCGTGGCGCT GAAGGAGGTC GCGCTGACCC TGCGCTCGGG CGAGATCCTG
GGCATCGGCG GCGTCGCGGG CAACGGGCAG GAGGAACTGC TCTCGGCACT GTCGGGCGAG
ACCCCGACCG CACCGGGCAC CATCGCGCTG GAGGGCCGCG ACCTGTCACG CGCCGGCCCC
GAGGCGCGGC GCCGCGCCGG GCTCCTGGCC GCGCCCGAGG ACCGGCTGGG CCATGCCGCC
GTGCCCGAGT TCAGCCTGGC CGAAAACACG CTGCTGACCG CCGGCGCGCG GCAGAACCTC
ATCCGCCGCG GCCTCATCGA CCGCAAGGCC GCCACGGATT TCGCGCAACA GGTGATCCGC
GCCTTCGACG TGCGCACCCC CGGCCCCGAT ACGGCGGCGG GCGCGCTTTC CGGCGGCAAC
TTGCAGAAGT TCGTCATCGG CCGCGAGGTG CTGGGCCGGC CGCGCGTGCT GGTGGTGAAC
CAGCCGACCT GGGGCGTCGA TGCCGGCGCC GCCGCCGCGA TCCGCCAGGC GCTGCTGGAC
TTGGCGGCGC AGGGGGCCGG GCTGATCGTC ATCAGCCAGG ATCTCGACGA ATTGCTGGAG
CTTTCGGATC GTTTCTGCGC GCTGAACCAG GGCCGGCTCT CTGCCCCCCG CCCGACCGAG
GGCCTGACGA TCGAGGAGAT CGGCCTGATG CTGGGCGGCG CCCATGGCAT GGAGGTGGCG
CATGTTCCGG CTTGA
|
|---|
| Protein sequence | MSNVFRAEGL GKTYPGVRAN DDVSFAVEAG EIHALLGENG AGKSTLVKMI YGLVRPDEGQ
MALLGAPYAP HDPRAARAAG VAMVFQHFSL FDAMTVAENV ALGMENPPPQ PELSRRIADL
SQGYGLPLNP ARRIAALSAG ERQRVEILRC LLQNPRLLIM DEPTSVLTPQ EAEILFATLR
QLAEAGTAIL YISHKLEEIR SHCDRATILR QGKVVGTVDP RAHSARELAA MMVGAEMRLV
DRSGRKPAAP VLQVRGLSTA GGEGVALKEV ALTLRSGEIL GIGGVAGNGQ EELLSALSGE
TPTAPGTIAL EGRDLSRAGP EARRRAGLLA APEDRLGHAA VPEFSLAENT LLTAGARQNL
IRRGLIDRKA ATDFAQQVIR AFDVRTPGPD TAAGALSGGN LQKFVIGREV LGRPRVLVVN
QPTWGVDAGA AAAIRQALLD LAAQGAGLIV ISQDLDELLE LSDRFCALNQ GRLSAPRPTE
GLTIEEIGLM LGGAHGMEVA HVPA
|
|---|
| |