| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1427 |
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| Symbol | |
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| ID | 4580482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1396961 |
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| End bp | 1399102 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639768743 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_915224 |
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| Protein GI | 119384168 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.656357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTC GCATTGCTCT TTTGACTTCC GTTTTGATCC TGCCGCCGAT TTCCGTCGGT
GCTCAAGTAC AAGACGATGG AAGCTTCCTT CTGGGCACGA TCCATATCCA GGCTCGCAAG
CGGGATGAAC TAGCCTTCGA GATCCCAGTC GCGGCGACGA TACGGGAAGG CGCGGATCTA
GAATTTGGGT CATTGGATCC CGGCGTGGAT CTGGCGCGCA CTACGCCGAA TTTCAACTAT
GTAGACTTTG CCGTTCCCGG AAACTCGTTT GGTTCGGTGC GGGGTATCGG GCCATTGGGA
AGCCCTTTAA ATTCGCTCGA CAATACAATT GGGTTTTCCA CGAACGGGGT GCCGACAACC
TCATTCGGAT TCTCTCCTAC ACTCTTCGAT GTCGAGCAGG CCGAGGTCTT GAGGGGGCCG
CAGGGAACAC TTTTCGGACG AAACGCACTG GGTGGTGCGG TGAATATCGT TACGAGGCGG
GCCGATGGTG TGCCGGAGTT CATCGTCGGA ACGGAGGTTG GAGAAGATGG CCTGCGAACG
CTCGATCTCG CTGCTGGCGG CTGGGTTGTT CCCGATTTGG TGGCTGGACG TGTGGCGCTC
CGTTTCCAGG AGTTTGATGG TGATATTCCG AACGGGGTTG CGGGTGGAAA GGACGGGGAC
GCAAGTATCG CGGCTGGACG TATCTCACTT GCCTTCGACC CTGATGGACC TTTAAGCGCG
GACCTCGTTC TGGGCCGGGA TCGCGACAGG CGAAATAATC CAATATATTT GTGGGCAGAA
CATCCCGACT TTCCCGTTAG CGGATCGGAC ATGGTGCAGG TCGGCGAGCG CGTGATTGAT
CATATCAGTT TGAGCGTCCA ACGCGAGTTC GAGGGGTTCA CCTTTCACTC CGTCACGGGA
TTTCAGGATA TCGCGGTCAC AACCATCACC GATGATACGG ATTCGTTCCT GTATTCGAGG
TATTTATCGG ACTACGGAAT GCCGATGTCA CCAGGTGCAT TTTCCGATCC GGATGAAGAC
TGGGGAATCG TTTATGAAGG CGAGCGTGTC TTCAGTCAGG AATTTCGGCT GAATTCTCCT
GAAGGAGCGC CAGTTGAGTG GGTGGCGGGA CTGTCCTACT TCCGCTCCCA ATACGACATG
GATCGAACGC AGCAGAGCAA TTACTCCCCG TCTCTGAACG GACATTACGA CACCACGATC
ACCAGTCAGA CACTGGCGGT CTTCGGAGAC ATTTCCGCGC CTGTCAGTGA CCGACTGACC
TTCTCGGCAG GCCTGCGGGC CGCGCGCGAT CGCCAGACCT TCGACACGAC CTATGTCTCG
AATGGCGCTC CGGGCACGGT GCCAGGGCAT CGGCAAAGCG GGAGTTTCGA AGATGACTAC
GTCACTGGCC GCGTTGCAGT AGACTGGCGC TGGAACGATG AATGGATGAG TTATGCCTCG
ATTTCCAGGG GGTATGCTTC TGGTGGATTC GAACGTTATT CCTTGAACGC CTATATGGGA
CTGGACACGC CTCCCTTCCG GCCATCCACT TCTTGGGCTT ATGAACTGGG CACGAAAGCC
GAGCTTTTGG ACGGCCGGCT CAGCCTGTCG GGCGCACTGT TCTACAACAA TGTCGCGGAC
GGACAGCTGA CGGCATTCGA CGCGGCCACA ATGAGCTTCG CGTTCGATAA TCAGGATTAC
CGAAGCTATG GAGCCGAGCT CGAGTTTCGT GCGGAGTTGA CGCCTCATGT GGCGCTTCGA
GGGGGTGTCG GTTGGACGAG AACGCGCTTG GTCGATGTCC CGAACGGGGT CACCACTGGC
GCGATGAATG GCAACAGGGT TCCGAATATG CCCGAGCTTA CCGCAAGTCT TGGGCTGGAC
CTTCGCTATC CTCTGGGCCG AGGTGAGGCA ATTGCCTCTC TGGATGTGTC GCATGTCGGA
GGACGTATGG CTGACATTGG CAATAGCTGG GAAATCCCTT CGTACACGGT GGCGGATCTC
CGAGTCGGTT GGGAACGAGA CGGGATGGAA CTCTACGCCT TTGCCCGCAA TTTGACTGAT
GAACGGCCTA TCTACTTCTC GTCCACGTTC TCGCCAAACG CACATAGCGC AATTGTTGGC
CGCGGGCGCG TCCTTGGCCT TGGCGCAACC TGGCGGTGGT GA
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| Protein sequence | MKIRIALLTS VLILPPISVG AQVQDDGSFL LGTIHIQARK RDELAFEIPV AATIREGADL
EFGSLDPGVD LARTTPNFNY VDFAVPGNSF GSVRGIGPLG SPLNSLDNTI GFSTNGVPTT
SFGFSPTLFD VEQAEVLRGP QGTLFGRNAL GGAVNIVTRR ADGVPEFIVG TEVGEDGLRT
LDLAAGGWVV PDLVAGRVAL RFQEFDGDIP NGVAGGKDGD ASIAAGRISL AFDPDGPLSA
DLVLGRDRDR RNNPIYLWAE HPDFPVSGSD MVQVGERVID HISLSVQREF EGFTFHSVTG
FQDIAVTTIT DDTDSFLYSR YLSDYGMPMS PGAFSDPDED WGIVYEGERV FSQEFRLNSP
EGAPVEWVAG LSYFRSQYDM DRTQQSNYSP SLNGHYDTTI TSQTLAVFGD ISAPVSDRLT
FSAGLRAARD RQTFDTTYVS NGAPGTVPGH RQSGSFEDDY VTGRVAVDWR WNDEWMSYAS
ISRGYASGGF ERYSLNAYMG LDTPPFRPST SWAYELGTKA ELLDGRLSLS GALFYNNVAD
GQLTAFDAAT MSFAFDNQDY RSYGAELEFR AELTPHVALR GGVGWTRTRL VDVPNGVTTG
AMNGNRVPNM PELTASLGLD LRYPLGRGEA IASLDVSHVG GRMADIGNSW EIPSYTVADL
RVGWERDGME LYAFARNLTD ERPIYFSSTF SPNAHSAIVG RGRVLGLGAT WRW
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