| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1416 |
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| Symbol | secD |
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| ID | 4581281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | - |
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| Start bp | 1383891 |
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| End bp | 1385555 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639768732 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_915213 |
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| Protein GI | 119384157 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.457453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGACA TCCCGTTCTG GAAGCGTCTG CTGATCCTGG GCCTTGTCGC CCTGGGCCTG
CTTTATGCCA CGCCGAACCT GTTCTATACC AAGGTCGAGC AGCATAACGA CGCCATCACC
GCCGCCGAAC GCAACGGTTT CGAAACCCCC GAGGAGGCCG CGGCCCGCGC CGGCTGGCCG
AACTGGCTGC CTTCGGGGCT GGTCAACCTG GGCCTCGACC TGCGCGGCGG CGCCCATCTT
CTGGGCGAGG TGCATGTCCA GGATGTCTAC AAGGCGCGCA TGGATTCGCT CTGGCCGGAA
CTGCGCGACG CGCTGGTGGC GCAGCGCGAG GTGGTGGGCG CCGTCCGCCG CGTCCAGGCG
CCCGAGGGCC AGCTTGCGGT CGAGATCGGC AATCCCGAAC AAATGGCCAA GGCGGTCGAG
ATCGCCCGCG GCCTTGCCAC CCCGGTCGCC TCGCTGACCG GCGCGGGGCA GAGCGATCTT
GCGATCTCGG CCAGCGGCAA CCGGCTCAAC GTGCAGCTTT CGGATGCGGA AAAGGCCGCG
ACCGATGATC GCACCGTGCA GCAGTCGCTG GAGATCATCC GCCGCCGCAT CGACGAGGTC
GGCACGCGCG AACCCACGAT CATGCGCCAG GGCAAGGATC GCATCCTGAT CCAGGTGCCC
GGCATCGGCT CGGCCGAAGA ACTCAAGGAG CTGATCGGCA CCACGGCGAA GCTGACCTTC
AACCCGGTGG TCAGCCGCAT CGCCGACGCC AATGCCCGCC CGGGGCCCGG CAACGTGCTG
CTGCCCTCGA TGGACGAGCC CGGCGTCTAT TACGTCATCG AGGAAAGCCC GGTCGTCACC
GGCGAGGACC TGACCGACGC CCGGCCCAGC TTCGACCAGA ACGGCGCGCC GGCGGTCGAC
TTCCGCTTTG GCCCGTCGGG CGCCAAGCGG TTCGGGGCCT ATACCTCGTC CAATATCGGC
CAGCCCTTCG CCATCGTGCT GGACAACCAG GTGATCTCGG CTCCGGTGAT CCGGCAGGCG
ATCACCACCG GCTCGGGGCA GATCTCGGGC GCGATGAATG TCGACGAATC CACCCGGCTT
GCCGTGCTGC TGCGCGCGGG CGCGCTGCCG GCCGAGATGA CCTTCCTGGA AGAGCGCACC
ATCGGCCCCG AACTTGGCCA GGATTCGATC GATGCGGGCC GGCTCTCGTC GATCATCGCC
ACGGTCGCCG TGGTGGCCTA TATGGTCGCG AGCTATGGGC TTTTCGGCGT CTTCGCCTCG
ATCGCGGTGA TCGTCAACGT CATCCTGATC CTGTCGGTCA TGTCGATGAT GGGGGCGACG
CTGACCCTGC CGGGCATCGC CGGCATCGTG CTGACCGTCG GCACGGCGGT CGATGCCAAC
GTCATCATCT ATGAGCGCAT CCGCGAGGAA TTGCGCGCCG GCAAGCGCAT CGTGAAGGCT
ATCGACGACG GCTTCGGCGA GGCGATGAGC GCGATCATCG ACGCCAACGT CACCAGCTTC
ATCGCGGCTG CGGTGATGTT CTTCCTGGGC TCGGGCCCGG TCAAGGGCTT TGCGGTCACG
CTGACCATCG GCCTGGTCAC ATCGGTCTTC ACCGCGATCT ACCTGACGCG GCTGATGATC
GTGTTCTGGC TGGAATGGCG CAAGCCCAAA GAACTGATCT TGTAA
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| Protein sequence | MLDIPFWKRL LILGLVALGL LYATPNLFYT KVEQHNDAIT AAERNGFETP EEAAARAGWP
NWLPSGLVNL GLDLRGGAHL LGEVHVQDVY KARMDSLWPE LRDALVAQRE VVGAVRRVQA
PEGQLAVEIG NPEQMAKAVE IARGLATPVA SLTGAGQSDL AISASGNRLN VQLSDAEKAA
TDDRTVQQSL EIIRRRIDEV GTREPTIMRQ GKDRILIQVP GIGSAEELKE LIGTTAKLTF
NPVVSRIADA NARPGPGNVL LPSMDEPGVY YVIEESPVVT GEDLTDARPS FDQNGAPAVD
FRFGPSGAKR FGAYTSSNIG QPFAIVLDNQ VISAPVIRQA ITTGSGQISG AMNVDESTRL
AVLLRAGALP AEMTFLEERT IGPELGQDSI DAGRLSSIIA TVAVVAYMVA SYGLFGVFAS
IAVIVNVILI LSVMSMMGAT LTLPGIAGIV LTVGTAVDAN VIIYERIREE LRAGKRIVKA
IDDGFGEAMS AIIDANVTSF IAAAVMFFLG SGPVKGFAVT LTIGLVTSVF TAIYLTRLMI
VFWLEWRKPK ELIL
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