| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1282 |
|---|
| Symbol | |
|---|
| ID | 4580901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1243974 |
|---|
| End bp | 1244510 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639768600 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_915083 |
|---|
| Protein GI | 119384027 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.410778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGTA ACATCGTGCT GATCGGAATG ATGGGGGCGG GCAAGACCGC GATCGGGGGC
GAACTTGCCC GCCGGTTGCG TAGGCCGTTC TCGGATACCG ATGCCGAGAT CGAGCGCGCC
GCCGCCATGA CCATCCCCGA AATCTTTGCC CGCGACGGCG AGGAATTCTT TCGCGCCCGC
GAATCGGAGG TGCTGGGCCG GGTCCTGGCC TCGGGGCCGG GCGTCGTCTC GACCGGCGGC
GGCGCCTGGC TGCGTCCCGA GAACCGCGCC CGCATCGGCG AAGACGGCGT CTCGGTCTGG
CTGGACTGCG ATCTGGAGAC GCTCTGGCAC CGGGTCCGGC ACCGCCCGAC CCGGCCGCTG
CTTCAGACCC CCGATCCGCG CGGCACGCTG GAGCGGCTGC TGGACGAGCG CAGCCCGGTC
TATGCGCTGG CCGACATCCG CGTCCCCGCG CAGCGCGGCG ACAGCATCGA ACAGACGGCG
GACCGCGTGC TGGACGCGAT CCGCGCGCAT GATCCGGCGA TCCTGGAGGG CAAATGA
|
|---|
| Protein sequence | MRRNIVLIGM MGAGKTAIGG ELARRLRRPF SDTDAEIERA AAMTIPEIFA RDGEEFFRAR
ESEVLGRVLA SGPGVVSTGG GAWLRPENRA RIGEDGVSVW LDCDLETLWH RVRHRPTRPL
LQTPDPRGTL ERLLDERSPV YALADIRVPA QRGDSIEQTA DRVLDAIRAH DPAILEGK
|
|---|
| |