Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1171 |
Symbol | |
ID | 4579936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 1141928 |
End bp | 1144021 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639768487 |
Product | TonB-dependent receptor |
Protein accession | YP_914972 |
Protein GI | 119383916 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGGGTCA CGACAAAGGC GGGATTGCTC TGCGCCACCA TTCTTGGCTG GGTGGCAACG CCGGTCGCGG CGCAGGTGGC CGAGCCATCC CAGATCTTCG TGCTGGGCAC GATCACCCTG ACGGCGGACA GCGACGAAAG CCGGGGCGGC ACGACGACCA GCGTGACCTC CGACGAGGTC CTGCGCAGCA ACCGCACCTC GCTGGACGAC GCGCTGCGGG TCGCGCCCGG AGTGCAGGTC GGCAATACCG GCGGCAGCCG GAACGAGCGG CTGATCCATG TCCGGGGCTT CGACCGCTTT CAGGTTCCGC TGTCGGTCGA CGGCATCCGC GTCTATCTGC CCGCCGACAA CCGACTGGAT TACGGCCGCT TCCTGACGCC GGACCTGGCC GAAATCCAGC TGCAAAAGGG CTATGTCTCG GTCCTGAACG GGCCGGGCGG CATGGGCGGC GCGATCAATC TGGTCACGCG CCAGCCGACC CAGCCTTTCG AGGGCGAGGC GCGCCTGGGC ATCGAGGCCG GGAACCGCGG CGACGTGACG GCACGCAGCG GCTTTCTGTC GCTGGGCACG CGGCAACAGG ATTACTGGCT GCAGGGCAGC CATATGCGGC GGGACAGCGA CGGATTCTAC CTGTCCCGCG ACTATGAGCC GCGACCGCAA CAGGGCGCGG GCCTGCGCGA CAACAGCGAC ACCGACGACA GCCGCCTGAA CCTGAAGGCG GGCTGGACGC CGAACGCAAG CGACGAATAT GTGCTCAGCT ATACGCGCCA GACCGGCTCG AAAAAGGCCC CCTACAACAT CGACCAGCCC ATTCGCGGCA TCACCGACGC GCCCGGACCG GGCCAGGGCT GGCAGCGCGA CTGGACATGG CCGGAATGGG ACCTGGACAG CCTTGCCTTC TATTCCTATA CCGAACTGGG CGGCGGCTAT CTGAAGACGC GGGCCTATTA CAATCGCTTC GACAACCTGC TGTCGGCCTG GGACGATGCC AGCCATTCCG CCCAGACCGA GCGGCGCGCC TTCGACAGCC GCTACAAGGA CCGGGCCTGG GGGCTGAGCC TGGAGGCGGG GGCCGATCTG GGCGCGGCCA ACACCTTGCG CGGTGCGCTG CACTATCGCC GCGACAAGCA TCGGTCGATC CAGTTTTCGC AGCCCGGCCT GGGCGGCGGT GCCGACCCGA CCGAGGTGAG CGAAGAGAAA ACCTGGTCGC TGGCGCTGGA GAACACCTGG CAGGCGCGCG ACGACCTGAG CGTCATCGCC GGGATCAGCT ACGACCGCGC CGAGGTTCTG AAGGCCGACC GCACCGCCGA TGATGCGGGC CTGCCGACAG GCTCTTCGGA TGCGGTGAAC TGGCAGCTGG CCGCGATCTG GCAGCCCGAT TCCCGCGGAG AGTTCCATGC CAGCCTGTCC TCGCGCACCC GTTTCCCGAC GCTCTTCGAC CGCTACAGCA CGCGGTTCGG CTCGGCCGTG CCCAATCCCG ACCTGAAATC CGAACGCGCG CTGAATGTCG AGCTTGGCTA TGGCGGCGAT CTGGGCCCTG CGCGGATCGA GACGGCGCTG TTCTACAGCA AGGTCAGGGA CATGATCCAG TCGGTGCCGA CCGGCGAGTT GAACGACGAG GGCGAGGCCC TGTCGCAAAG CCGCAATGTC GGCGACGGCA CCTACAAGGG CTTCGAGGTC GCGGCCAGTT GGGAACTCGA CGACCGCTTC GGGCTGGTGG CGAACTATAC CTATCTGCAC CGGGACATCT CCGATCCGAT CCGCGCCGAT TACCGCCCCA CCGACACGCC GCGCCACAGC GCCTATCTGC GGCTCGACTG GCGGGCGATG GACAACCTGA CCATCTCGCC CTCGGTCGAG TTTTCCAGCT CTCGCCTGTC GGAAAGCGCG ATCCAGCCCG ACGATCCGGC GCAGATCGCC TATACCCGCA TGGGCGGCTT CGGACTGGCC AATCTGGATG CCGAATGGCA GGCGACCGAG CAGGCCAGCG TCGTGTTCGG CATCCGCAAC CTGTTCGACC GGAACTATCA GCTGGTCGAA GGCTATCCCG AGCCGGGCCG CTCGTTCTTC CTGACGACCC GCGTAACCTT CTGA
|
Protein sequence | MRVTTKAGLL CATILGWVAT PVAAQVAEPS QIFVLGTITL TADSDESRGG TTTSVTSDEV LRSNRTSLDD ALRVAPGVQV GNTGGSRNER LIHVRGFDRF QVPLSVDGIR VYLPADNRLD YGRFLTPDLA EIQLQKGYVS VLNGPGGMGG AINLVTRQPT QPFEGEARLG IEAGNRGDVT ARSGFLSLGT RQQDYWLQGS HMRRDSDGFY LSRDYEPRPQ QGAGLRDNSD TDDSRLNLKA GWTPNASDEY VLSYTRQTGS KKAPYNIDQP IRGITDAPGP GQGWQRDWTW PEWDLDSLAF YSYTELGGGY LKTRAYYNRF DNLLSAWDDA SHSAQTERRA FDSRYKDRAW GLSLEAGADL GAANTLRGAL HYRRDKHRSI QFSQPGLGGG ADPTEVSEEK TWSLALENTW QARDDLSVIA GISYDRAEVL KADRTADDAG LPTGSSDAVN WQLAAIWQPD SRGEFHASLS SRTRFPTLFD RYSTRFGSAV PNPDLKSERA LNVELGYGGD LGPARIETAL FYSKVRDMIQ SVPTGELNDE GEALSQSRNV GDGTYKGFEV AASWELDDRF GLVANYTYLH RDISDPIRAD YRPTDTPRHS AYLRLDWRAM DNLTISPSVE FSSSRLSESA IQPDDPAQIA YTRMGGFGLA NLDAEWQATE QASVVFGIRN LFDRNYQLVE GYPEPGRSFF LTTRVTF
|
| |