| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1031 |
|---|
| Symbol | |
|---|
| ID | 4579586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | + |
|---|
| Start bp | 1009116 |
|---|
| End bp | 1010735 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639768353 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_914838 |
|---|
| Protein GI | 119383782 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAGCG GAAATGCAGC GGAATACGAT TTCATCGTGG TGGGCGGCGG CTCGGCCGGC
TCGGTCCTGG GGGCACGGCT CAGCGAAGGT GGCGACAGGG TTCTGCTGCT GGAGGCCGGG
GCGGGCAGGC ATGTGCTGCC CTATGACCTG CCGTTCCTGG CTGCCAAGCT GTTCTCGTTC
AAGGCCAACA ACTGGGCCTA TGAATGCCTG CCGCAGCAGG GCATGAACGG CCGCCGCCAG
CTCTTTCCGC GCGGCAGGAT GCTGGGCGGC TCGTTCATCT TCAACGGGGC GCAGTATATT
CGCGGCAATC CGGCGGATTT CGACCATTGG CGGCAACTCG GCAATCCCGG TTGGGGCTAT
GAGGATGTGC TGCCCTATTT CCGCAAATCC GAGGATTATC GCGGCACCCC AAGCCCTTAT
CATGGCACCG AGGGGCGGCT GCCGGTGGCG AAGCCGCCGA TGGTGAACCC GCTGACGCGG
ATTTACCTTC AAGCCTGCGC GCAGGCCGGC CATCCGCTGA ACGGGGATTT CAACGGTGCC
TCGCAGGACG GCTTCGGCAT CTACGATTTC AACATTGCCG AGGGTCGCCG CATGACTACG
GCACGGGCAT TCCTGCGGCC GGCGATGGCG CGGCCGAACC TGCATGTCGC GACCGGGGCG
CTGGTGCGCC GCGTGATCCT GCGCGACGGG CAAGCGGTCG GCGTCGAATA TGAACGCGGC
GGCAAGATCG AAACCGCCAT GGCCCGGCGC GAGATCGTGC TTGCGGCGGG CTCTTTCAAC
TCGCCCAAGC TGTTGATGCT GTCGGGGATC GGCGATCCGC GAGATCTGGC GCCGCATGGC
ATCTCCGTCA CCCATGTCCT GCGGGGTGTC GGAAAGAACC TGCAGGATCA TGTGAACGTC
TCGGTCGCGC ATGCGGCAAA GCAGCCGATC TCGTTTGCGC GCACGCTGCG GGTGCATCGG
CTGGCGGCGG CGATGCTGCA GGGCGTGCTG CTGAAACGCG GCCAGATCAC CCAAAGCCCG
CTGGAGGCAG GGGGCTTCTT TTCCTCGCGA GATGGCGTGG ACGCGCCCGA GTTTCAGGCC
GTGTTCATCC CCTGGTATCC GGGCAGCGGC TTGCGGCTTT GGATGCCCTG GGCCGACCGG
CTGGAGGGGC ACAGTTTCGT GACCCATGTC TGGCCGAACC GGCCCGAGAG CCGGGGGCGG
ATGTGGCTGG CCTCGAACGA TCCCAAGGCG CCGCCGGTCT TCGATCCGAA CTTCCTGTCG
GAGGAATCCG ACCTGGCGCT GACCCGTGCG GCGATCCGCG AGACGCGCCG CATCTTTGCC
CAGCCCGCCT TCGATGCGGT GCGGGGCGAG GAACTGGCAC CGGGCGCTGA CATGCGCTCG
GACGACGAGC TGGACCAGTA TATCCGCCAA AGCTCGGGCA TCGGGCACCA TACCTGCGGC
ACCGCCAGGA TGGGGCAGGA TCCCATGGCC GTGGTCGATC ACCAGTTGCG GGTCCACGGC
ATCGGCGGGC TGCGGGTCGC CGACGCCTCG ATCATGCCGA CCATGGTCAG CGGCAATACC
AATGCTGCCA CCATCATGAT CGCCGAAAAG GCGGCCGACA TGATGCTGGG CGCGTCATGA
|
|---|
| Protein sequence | MSSGNAAEYD FIVVGGGSAG SVLGARLSEG GDRVLLLEAG AGRHVLPYDL PFLAAKLFSF
KANNWAYECL PQQGMNGRRQ LFPRGRMLGG SFIFNGAQYI RGNPADFDHW RQLGNPGWGY
EDVLPYFRKS EDYRGTPSPY HGTEGRLPVA KPPMVNPLTR IYLQACAQAG HPLNGDFNGA
SQDGFGIYDF NIAEGRRMTT ARAFLRPAMA RPNLHVATGA LVRRVILRDG QAVGVEYERG
GKIETAMARR EIVLAAGSFN SPKLLMLSGI GDPRDLAPHG ISVTHVLRGV GKNLQDHVNV
SVAHAAKQPI SFARTLRVHR LAAAMLQGVL LKRGQITQSP LEAGGFFSSR DGVDAPEFQA
VFIPWYPGSG LRLWMPWADR LEGHSFVTHV WPNRPESRGR MWLASNDPKA PPVFDPNFLS
EESDLALTRA AIRETRRIFA QPAFDAVRGE ELAPGADMRS DDELDQYIRQ SSGIGHHTCG
TARMGQDPMA VVDHQLRVHG IGGLRVADAS IMPTMVSGNT NAATIMIAEK AADMMLGAS
|
|---|
| |