Gene Pden_1024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1024 
Symbol 
ID4579579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1003043 
End bp1004131 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content63% 
IMG OID639768346 
ProductABC transporter related 
Protein accessionYP_914831 
Protein GI119383775 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAAC CACTGGTCTC CTTCGAGGGC GTCGCCAAGC GTTTCGGCAG CTATACCGCC 
GTGCAAAAGA TGGATCTGCA GATCCACAAG GGGGAATTCC TTGCCATCAT GGGCTCGTCC
GGCTGCGGCA AGACCACGAC GCTGCGCATG CTGGCCGGGC TGGAGGCGCC CAGCGAGGGC
ATCATCCGCC TGGCCGGCAG GCCGATCAAC GACCTGCCGA GCTGGAGCCG CGACACGCCC
ATGGTCTGGC AGAGCCTGGC ATTGTTTCCC TTTCTCAACG TGATCGAGAA TGTCGAGTTC
GCGCTGAAGA TGCGCGGCAT AGGCCGGGCC GAGCGCCGGC GCCGGGCCGA ACAGTGGCTG
GACCGCATGC AGATCGCCGA GTTCGCCAGC CGCAACATTG GCCAGCTTTC CGGCGGCCAG
CGTCAGCGTG TCGCCCTGGC GCGTTCGTTG GTGGTCGAGC CCGATATCCT GCTGCTCGAC
GAGCCGCTTT CGGCGCTGGA TGCGGCGCTG AAGGTACGGA TGCAATCGGT GCTCAAGAAC
CTGCAACGCG AGACCGGCAT CACCTTCGTC TATGTCACGC ATAGCCAGTC CGAAGCCTTC
TCGATGGCCG ACCGGGTCGT CATCATGAGC CGGGGCAAGA TCGAACAGAT CGGCACACCG
CAGGAAATCT ATCGCACGCC CCGCACGCGC TTCGTCGCGG ATTTTCTGGG GTCGTCCAAT
ATTTTCCCGG GCCAGTTGCA GCAGGACCGG AGCGGCCGTG CCGCCATCGC CACGGCCAGC
GGCCATTTCC TGCTTGCCGA AGATGCGGCA GCCTCGGCAA TGCCAGGGCA ATCGGCCAGC
CTGACGGTGC TGGACACCAG GATGCAGATC CATCTTCAAC CGCCGGCAGA CGCGGTGAAC
ATGGTCGAGG CGCGCATGAT CGGCGAGGAA TTCGTCGGCG CCACCGCCAC CATCTATTTC
GAAACCGGCG CGGGACAGGA AATACGGGTG CAGAAATCGC ATGAAGAACT GGCCGACCTT
CCGCTGGCCG TGGGCCGTTC CTTTCACTTG TCATGGCTTC CCGCAGATGG ACATCTCGTG
CCAGAATAG
 
Protein sequence
MQEPLVSFEG VAKRFGSYTA VQKMDLQIHK GEFLAIMGSS GCGKTTTLRM LAGLEAPSEG 
IIRLAGRPIN DLPSWSRDTP MVWQSLALFP FLNVIENVEF ALKMRGIGRA ERRRRAEQWL
DRMQIAEFAS RNIGQLSGGQ RQRVALARSL VVEPDILLLD EPLSALDAAL KVRMQSVLKN
LQRETGITFV YVTHSQSEAF SMADRVVIMS RGKIEQIGTP QEIYRTPRTR FVADFLGSSN
IFPGQLQQDR SGRAAIATAS GHFLLAEDAA ASAMPGQSAS LTVLDTRMQI HLQPPADAVN
MVEARMIGEE FVGATATIYF ETGAGQEIRV QKSHEELADL PLAVGRSFHL SWLPADGHLV
PE